Bioconductor Sigpathway

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pathway analysis sigpathway Genesets_EntrezGeneIDs.RData

6.1 years ago maria • 0

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sigPathway sigPathway

12.5 years ago Voke AO ▴ 760

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goTools sigPathway topGO goTools sigPathway topGO

updated 14.2 years ago by Michael Dondrup ▴ 550 • written 14.2 years ago by Veerendra GP ▴ 100

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Microarray Annotation sigPathway Microarray Annotation sigPathway

14.5 years ago 山中程 ▴ 10

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915

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sigPathway sigPathway

15.4 years ago Adrian Johnson ▴ 330

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883

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sigPathway sigPathway

16.5 years ago Srinivas Iyyer ▴ 600

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sigPathway sigPathway

updated 16.8 years ago by James W. MacDonald 67k • written 16.8 years ago by Srinivas Iyyer ▴ 600

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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k

Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…

Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0

Thank you, so much, for this reply!

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10

That indeed worked, thanks a lot for the help (and for karyoploteR)

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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome

Answer: Epic v2 Annotation CpG_maf source?

Answer: bioconductor packages on bioconda

Filtering low variance genes for WGCNA

A: Filtering low variance genes for WGCNA

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