Bioconductor Sigpathway

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pathway analysis sigpathway Genesets_EntrezGeneIDs.RData

7.2 years ago maria • 0

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sigPathway sigPathway

13.5 years ago Voke AO ▴ 760

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goTools sigPathway topGO goTools sigPathway topGO

updated 15.2 years ago by Michael Dondrup ▴ 550 • written 15.2 years ago by Veerendra GP ▴ 100

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Microarray Annotation sigPathway Microarray Annotation sigPathway

15.5 years ago 山中程 ▴ 10

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sigPathway sigPathway

16.4 years ago Adrian Johnson ▴ 330

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993

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sigPathway sigPathway

17.5 years ago Srinivas Iyyer ▴ 600

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sigPathway sigPathway

updated 17.8 years ago by James W. MacDonald 68k • written 17.8 years ago by Srinivas Iyyer ▴ 600

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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