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sigpathway
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master gene list for pathway analysis
pathway analysis
sigpathway
Genesets_EntrezGeneIDs.RData
5.6 years ago
maria
• 0
0
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4
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2.8k
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PANTHER in R.... Gene lists in sigPathway?
sigPathway
sigPathway
12.0 years ago
Voke AO
▴ 760
0
votes
2
replies
1.9k
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help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 13.6 years ago by
Michael Dondrup
▴ 550 • written 13.6 years ago by
Veerendra GP
▴ 100
0
votes
0
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929
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computer out of memory when using sigpathway
Microarray
Annotation
sigPathway
Microarray
Annotation
sigPathway
14.0 years ago
山中程
▴ 10
0
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0
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812
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sigpathway pheno object
sigPathway
sigPathway
14.9 years ago
Adrian Johnson
▴ 330
0
votes
0
replies
778
views
sigPathway on Agilent data
sigPathway
sigPathway
15.9 years ago
Srinivas Iyyer
▴ 600
0
votes
3
replies
886
views
How can I make genesets for sigpathway
sigPathway
sigPathway
updated 16.2 years ago by
James W. MacDonald
65k • written 16.2 years ago by
Srinivas Iyyer
▴ 600
7 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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tangming2005
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