Bioconductor Single-cell sequencing

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single-cell sequencing barcodes

updated 2.1 years ago by nk130 • 0 • written 6.9 years ago by Philip Lijnzaad ▴ 160

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rna-seq phylogenetics protein modelling single-cell sequencing Job

5.6 years ago liam.childs • 0

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single-cell sequencing barcodes

6.9 years ago Philip Lijnzaad ▴ 160

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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by nytwordlehints • 0

Amazing insights! I learned a lot from this.[pokemon overlord][1] [1]: https://pokemonoverlord.com

Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k

I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…

Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k

Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…

Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230

Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…

Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0

Thank you, I appreciate your time and help.

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Answer: p-adjusted values in multiple comparisons

Comment: p-adjusted values in multiple comparisons

DiffBind dropping peaks in ATAC-seq data

A: decideTests() options in LIMMA

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