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Comment: Poor dispersion fit in DESeq2
by
Ben
▴ 10
I had some help over on [biostars](https://www.biostars.org/p/9602735/#9602746), suggesting my dispersions looked bimodal, which I agreed w…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
4.0k
TnT has been fixed and undeprecated DNABarcodes has been fixed and is undeprecated
Answer: rtracklayer accessing UCSC data table not working
by
Robert Castelo
★ 3.4k
hi, just for completeness, the UCSC RepeatMasker tracks are also available at the AnnotationHub, as GRanges objects; see the vignette of th…
Comment: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, but it isn't clear from your…
Answer: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Votes
Poor dispersion fit in DESeq2
Comment: Using edgeR and a spike-in to calculate absolute abundance
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
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