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spotSegmentation package: How to "display the entire block of segmented spots at the end of processing"
spotsegmentation
argument
visualization
8.0 years ago • updated 7.9 years ago
rene_houtman
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spotsegmentation
CGH
spotSegmentation
CGH
spotSegmentation
19.2 years ago
Abdel Benajjou
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spotSegmentation
spotSegmentation
spotSegmentation
20.2 years ago
michael watson IAH-C
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spotSegmentation
limma
spotSegmentation
limma
spotSegmentation
20.3 years ago
Jason Skelton
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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Your approach 1 is a bad idea. Subtracting the gene counts won't do what you want to do. I would personally check to see if there is any…
Comment: Can NanoString data be analyzed using DESeq2?
by
James W. MacDonald
68k
You can always discard, although you can also retain them to check for unexpected differences.
Comment: DESeq2 on NanoString Data
by
Michael Love
43k
Yes, if I discern a batch from EDA including looking at PCs, sample correlations, etc. It is close to SVA, we discuss both in the workflow…
Comment: DESeq2 on NanoString Data
by
thkapell
▴ 10
Thanks Michael. To this end, do you routinely use RUV or only when you detect a batch? It looks like it works in a similar fashion to SVA w…
Comment: Can NanoString data be analyzed using DESeq2?
by
thkapell
▴ 10
Thank you. I agree with your thoughts about the similarities of NanoString with RNA-seq. NanoString though, also has positive, negative pro…
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Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
Comment: Are voomByGroup and voomLmFit compatible?
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