Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
No posts found.
0 results • Page
1 of 1
Recent ...
Replies
Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
by
Gordon Smyth
50k
The NG dispersion is almost zero for your data, meaning that there is almost no biological variation between the replicates. There are also…
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
BioinfGuru
▴ 30
No worries, wish I could be more help. Plotly provide a [3-D plot][1] function that's pretty simple (the two you did are still 2-D plots, t…
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Michael Love
42k
If you manually compute PCA on VST data, what are the top 5 genes contributing to PC1? https://github.com/thelovelab/DESeq2/blob/devel/R/p…
Comment: Can I trust the differential expression analysis when the two groups overlap on
by
Eric Katagirya
• 0
I created a DESeqDataSet object using DESeqDataSetFromMatrix function. I don't anticipate any mismatching or mixup of sampleIDs.
Answer: Assymetric MA plot with no overall trend
by
Michael Love
42k
> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …
Votes
Answer: Can log2cpm be used for proteomics data normalization?
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Awards
• All
Popular Question
to
mat.lesche
▴ 90
Popular Question
to
jordi.planells
• 0
Scholar
to
mat149
▴ 70
Popular Question
to
Gordon Smyth
50k
Popular Question
to
maria.soler
• 0
Locations
• All
France,
5 minutes ago
WEHI, Melbourne, Australia,
12 minutes ago
United States,
18 minutes ago
Seattle, WA, United States,
50 minutes ago
United States,
1 hour ago
Traffic: 499 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6