updated 17 days ago by
Daniel Cameron
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written 5 weeks ago by
Dario Strbenac
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Comment: featureCounts: 0% successfully assigned fragments
by
KMS
•
0
Sorry for the incomplete information. I have bacterial RNASeq pair end data and using subread/Rsubread on Rstudio and ubuntu, after few sec…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
No, you have it wrong way around.
If you want deviance explained by x1, then you need
```
R2_x1 <- ( deviance without x1 in model - devia…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gemma
•
0
Many thanks for your answer.
To clarify the last point, `R2_nox1` is the proportion of the deviance explained when considering `design.no…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
Rory Stark
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4.4k
The latest version, `DiffBind_3.6.1`, contains fixes for these issues. You will get these fixes if you upgrade to `R_4.2.0` and `Bioconduct…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
The R2 values look completely normal. The median R2 is 10%, which seems somewhat low rather than high. With so many genes, you will natural…
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