updated 2.6 years ago by
shepherl
3.2k
•
written 2.6 years ago by
Krutik Patel
▴
10
3
votes
2
replies
237
views
Recent ...
Replies
Comment: DESeq 2 failes to load
by
Ruggero
•
0
This solved the error, in case someone else is having compilation errors from installing RSQllite:
install.packages('RSQLite', repos='http…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
Guido Hooiveld
★
3.3k
A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'. This hack is nothing more than ma…
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
nute11a
•
0
Hi James, thanks so much for your response! I actually did:
```
test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr")
``…
Comment: DESeq2 on normalized data
by
ATpoint
★
1.4k
It’s not supported. Use limma-trend with the log2-transformed normalized counts if that is all you have. See limma manual.
Votes
Awards
• All
Locations
• All
United States, 3 minutes ago
Denver, University of Colorado Anschutz Medical Campus, 23 minutes ago
United States, 1 hour ago
United Kingdom, 1 hour ago
Wageningen University, Wageningen, the Netherlands, 1 hour ago
United States, 3 minutes ago
Denver, University of Colorado Anschutz Medical Campus, 23 minutes ago
United States, 1 hour ago
United Kingdom, 1 hour ago
Wageningen University, Wageningen, the Netherlands, 1 hour ago
Traffic: 233 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6