updated 6.3 years ago by
Mike Smith
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written 6.3 years ago by
RichardJActon
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Comment: Interpret plot from DiffBind
by
Rory Stark
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See above, you want the sites where `Fold > 0`.
Comment: Interpret plot from DiffBind
by
Rory Stark
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That does seem like you have a very high number of open chromatin sites changing. How many are in the consensus matrix?
You can see how ma…
Comment: Interpret plot from DiffBind
by
Rory Stark
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I can see the confusion here as one color is being used in two different ways.
The dark blue/purple color is used for the bars on the left…
Comment: P-value histogram of testLinearModel is not uniform
by
ATpoint
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The work from @csoneson (https://pubmed.ncbi.nlm.nih.gov/29481549/) points out that for scRNA-seq a good prefiltering improves DE reliabili…
Answer: Diffbind "No genome detected"
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Rory Stark
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In this case, `DiffBind` is unable to automatically determine the genome from the supplied Input bam file. You should be able to specify `g…
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