Showing : svalue • reset
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Negative svalues from DESeq2 lfcShrink with ashr
ashr DESeq2 lfcShrink svalue
4.1 years ago Enrico • 0
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Answer: Log2foldchange strange behavior by ATpoint ★ 4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication by i.c.denhond • 0
Dear Michael, could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior by RambakKulit • 0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
Comment: Log2foldchange strange behavior by ATpoint ★ 4.8k
This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…
Comment: RE:proper pooling design by bicecac533 • 0
I look forward to reading more articles like this! [Stickman Boost][1] [1]: https://stickmanboost.com
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