updated 4 months ago by
Michael Love
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Ndimensional
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24 months ago • updated 23 months ago
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updated 2.3 years ago by
Michael Love
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written 2.3 years ago by
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updated 2.2 years ago by
Michael Love
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written 3.6 years ago by
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Recent ...
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Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
Thank you for your reply, but it is always the same case. Showing a significant p-adj when there isn't a difference between the 2 condition…
Comment: rDGIdb package inconsistency with web interface
by
christopherjamessteel1990
•
0
That is strange as I only see that previous version message when I go on the https://beta.dgidb.org/api version.
I did contact the writer …
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
ATpoint
★
3.6k
"Raw" counts, so you're plotting un-normalized data, hence plots have no meaning in terms of groupwise comparisons. Use the `normTransform`…
Answer: In DiffBind, dba.blacklist changes the minOverlap parameter
by
Sam
▴
10
I have found a workaround : running dba.blacklist **after** running dba.count (while running dba.count with minOverlap=1).
```
dbObj_co…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
By applying the log2 transformation to the raw counts of small RNAS AND after adding 1 to each count, the resulting values often approximat…
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