Biostar Ashr

Showing : ashr • reset

votes

replies

368

views

Ashr LFCShrinkage IHW DESeq2

7 months ago • updated 6 months ago Bex • 0

vote

replies

512

views

ashr DESeq2 apeglm

updated 11 months ago by Michael Love 37k • written 12 months ago by Guandong Shang ▴ 20

votes

replies

394

views

ashr DESeq2 lfcShrink svalue

17 months ago Enrico • 0

vote

379

views

deseq2 ashr

22 months ago da.de ▴ 20

votes

replies

730

views

deseq2 ashr rna-seq

2.3 years ago Alex • 0

votes

replies

272

views

ashr

2.3 years ago kavator ▴ 20

votes

replies

650

views

ashr Deseq2 lfcThreshold

updated 10 months ago by Michael Love 37k • written 2.3 years ago by Iryna • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Votes

Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

Awards • All

Popular Question to Alejandro Reyes ★ 1.8k

Popular Question to Leonardo Collado Torres ▴ 1000

Scholar to ATpoint ★ 1.4k

Scholar to voogd.o ▴ 10