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Comment: DESeq2 setting significant p-value
by
Dev
•
0
Sir but when I put in the data via the csv file, it was showing the gene names then but now when i set it in the form factor it is not show…
Answer: OrgDb for maize
by
James W. MacDonald
65k
```
> library(AnnotationHub)
> hub <- AnnotationHub()
|===========================| 100%
snapshotDate(): 2023-10-23
> query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
•
0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?"
No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
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