Bioconductor Coefficient

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3

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Network syntenet Clustering coefficient

5 months ago • updated 4 months ago Alexandros • 0

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1

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565

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DESeq2 interaction coefficient LinearModel RNASeq

updated 12 months ago by Michael Love 41k • written 13 months ago by Pedro Milanez-Almeida ▴ 10

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8

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resultsNames DESeq2 coefficient

2.6 years ago Jane • 0

3

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limma voom intercept coefficient

updated 7.4 years ago by James W. MacDonald 64k • written 7.4 years ago by rubi ▴ 110

4 results • Page 1 of 1

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Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k

`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…

Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k

You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…

Comment: SingleR annotation of several slots/patients by Bine ▴ 20

Ah, I just found the function JoinLayers.. I think this should help...

Answer: WGCNA correlation sign differences between eigen genes/ hub genes and clinical t by Vanatta • 0

It is possible that the hub genes are not directly related to the immune score but are instead related to other factors that are negatively…

Comment: SingleR annotation of several slots/patients by Bine ▴ 20

Thank you for your comment & help. When I try to run it with clusters it complains about having multiple layers: GetAssayData(kid.filt…

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

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