Bioconductor Syntenet

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syntenet synteny Network

written 3.2 years ago by Alexandros • 0

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syntenet microsynteny blocks synteny

written 2.6 years ago by Alexandros • 0

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syntenet

updated 23 months ago by Fabricio Almeida-Silva ▴ 40 • written 2.1 years ago by Sujeevan • 0

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syntenet

updated 2.1 years ago by Sujeevan • 0 • written 3.1 years ago by lwanderson8c • 0

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syntenet

updated 23 months ago by Fabricio Almeida-Silva ▴ 40 • written 2.1 years ago by Sujeevan • 0

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syntenet doubletrouble

23 months ago hfyuan2016 • 0

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syntenet Bacteria synteny

updated 2.2 years ago by Fabricio Almeida-Silva ▴ 40 • written 2.3 years ago by kluongni • 0

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Network syntenet Clustering coefficient

2.6 years ago Alexandros • 0

8 results • Page 1 of 1

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

You are correct. Thank you for noticing some of this 'pollution' with "_2" suffixes was unnecessary. I posted an updated SILVA classifier …

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

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A: The meaning of results produced by the bamQC function implemented in the ATACseq

The meaning of results produced by the bamQC function implemented in the ATACseqQC

A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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