Bioconductor Syntenet

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syntenet synteny Network

written 2.1 years ago by Alexandros • 0

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838

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syntenet microsynteny blocks synteny

written 18 months ago by Alexandros • 0

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489

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syntenet

updated 10 months ago by Fabricio Almeida-Silva ▴ 40 • written 12 months ago by Sujeevan • 0

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1.8k

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syntenet

updated 12 months ago by Sujeevan • 0 • written 2.0 years ago by lwanderson8c • 0

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447

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syntenet

updated 10 months ago by Fabricio Almeida-Silva ▴ 40 • written 11 months ago by Sujeevan • 0

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509

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syntenet doubletrouble

10 months ago hfyuan2016 • 0

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831

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syntenet Bacteria synteny

updated 12 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by kluongni • 0

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857

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Network syntenet Clustering coefficient

18 months ago Alexandros • 0

8 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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