Bioconductor Syntenet

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syntenet synteny Network

written 3.3 years ago by Alexandros • 0

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syntenet

updated 2.2 years ago by Sujeevan • 0 • written 3.2 years ago by lwanderson8c • 0

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850

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syntenet doubletrouble

24 months ago hfyuan2016 • 0

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Network syntenet Clustering coefficient

2.7 years ago Alexandros • 0

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1.2k

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syntenet microsynteny blocks synteny

written 2.6 years ago by Alexandros • 0

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745

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syntenet

updated 24 months ago by Fabricio Almeida-Silva ▴ 40 • written 2.2 years ago by Sujeevan • 0

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655

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syntenet

updated 24 months ago by Fabricio Almeida-Silva ▴ 40 • written 2.1 years ago by Sujeevan • 0

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1.1k

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syntenet Bacteria synteny

updated 2.2 years ago by Fabricio Almeida-Silva ▴ 40 • written 2.4 years ago by kluongni • 0

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Comment: Subsetting DDS object for individual conditions over time by A ▴ 60

Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…

Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k

It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…

Comment: GSEA error by Adithi • 0

Thank you so much. That makes perfect sense to me. I will work on this.

Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Votes

Answer: RNA Seq using Lrt

Answer: DESeq2 LRT Reduced Formula

Answer: DESeq2: LRT or WALD guidance

Answer: GSEA error

Answer: OrgDb for maize

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