Showing : syntenet • reset
2
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Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
syntenet
updated 2.0 years ago by • 0 • written 3.0 years ago by • 0
1
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10
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 3.2 years ago by • 0
0
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1
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1.1k
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Syntenet application to bacterial genome and file processing
syntenet Bacteria synteny
updated 2.1 years ago by ▴ 40 • written 2.2 years ago by • 0
0
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1
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722
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question about data processing for syntenet
syntenet
updated 22 months ago by ▴ 40 • written 2.0 years ago by • 0
0
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1
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633
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Syntenet error in infer_syntenet() Error in blast_list[[1]] : subscript out of bounds
syntenet
updated 22 months ago by ▴ 40 • written 23 months ago by • 0
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2
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MIcrosynteny block information - Syntenet
syntenet microsynteny blocks synteny
written 2.5 years ago by • 0
0
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4
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Error in classify_gene_pairs
syntenet doubletrouble
22 months ago hfyuan2016 • 0
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
2.5 years ago Alexandros • 0
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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