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tissueenrich
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Example from TissueEnrich documentation throws error
TissueEnrich
15 months ago
sarvesh.nikumbh
▴ 10
0
votes
4
replies
566
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Gene classification in TissueEnrich
TissueEnrich
updated 2.4 years ago by
Ashish Jain
▴ 10 • written 2.4 years ago by
xiaoxiaoxiaobu
• 0
0
votes
2
replies
394
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can TissueEnrich be used to calculate the tissue-specific lncRNAs in plants?
TissueEnrich
updated 3.7 years ago by
Ashish Jain
▴ 10 • written 3.7 years ago by
Carina Yang
• 0
0
votes
1
reply
505
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Overall genes number in the TissueEnrich package output
TissueEnrich
updated 4.0 years ago by
Ashish Jain
▴ 10 • written 4.0 years ago by
fshodan
• 0
0
votes
3
replies
923
views
How to handle replicates and treatment conditions in TissueEnrich package
rna-seq
TissueEnrich
tissue-specific expression
differential expression
updated 4.1 years ago by
Ashish Jain
▴ 10 • written 4.1 years ago by
andrew.oler
• 0
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Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Comment: Question about GWASTools gdsSubset
by
Stephanie M. Gogarten
▴ 840
You could see if an attribute has been set on the genotype node indicating the order: ``` > library(gdsfmt) > gdsfile <- system.file("extda…
Comment: Nested paired design with covariates in limma
by
Nathan
• 0
Hello Ibrahim, Gordon (this is an extension of the question) I have a data set that is similarly nested in subject (like "Subject_ID" abov…
Votes
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Question about GWASTools gdsSubset
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