updated 12 months ago by
Paul Harrison
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written 12 months ago by
Jon Bråte
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Comment: Limma paired analysis design question
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jefflincoln4
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Thank you Gordon. One more thing, why use the log of blood iron concentration?
Answer: Limma paired analysis design question
by
Gordon Smyth
42k
Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…
Comment: Extracting the findPalindrome() results
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Hervé Pagès
14k
Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…
Comment: Compute fgsea with my own database with R version 4.0.2
by
assaron
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190
I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…
Comment: Error installing Deseq2
by
ATpoint
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590
Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…
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