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tomas.rodriguez
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Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you, the code you provided gives boxplots for each data-point for pooled samples?
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
xuz
• 0
Could you try the following code and see whether you have any errors mf="MouseMethylation-12v1-0_A2.csv" manifest=readmanifest(mf) What …
Answer: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
I'm gonna guess something went wrong in libreoffice. Try also ``` with(prb1, plot(timepoint, count)) ```
Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you for feedback. As for spreadsheet plot - I have computed averages myself and used them for plotting.
Comment: Slightly different count plots from R and spreadsheet
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ATpoint
★ 4.1k
I don't think it is the purpose of the support site to debug Excel behaviour. The issue might be how it combines replicates into a single v…
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Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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