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treat
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12
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Appropriate use of the function treat of the limma package
limma
treat
microarray
bioconductor
9.1 years ago
svlachavas
▴ 830
1
vote
2
replies
1.2k
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TREAT function - how to interpret the result
limma
treat
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
Sanches
• 0
5
votes
10
replies
4.3k
views
Interpretation of results for treat & topTreat functions from limma regarding microarray abalysis
limma
treat
topTreat
microarray
updated 8.0 years ago by
Gordon Smyth
50k • written 8.0 years ago by
svlachavas
▴ 830
1
vote
2
replies
2.2k
views
Appropriate use of Limma Treat function
limma
treat
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
danielle.newby
• 0
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Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
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