Biostar Tweedeseq

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665

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tweedeseq differential expression

updated 4.5 years ago by Robert Castelo ★ 2.9k • written 4.5 years ago by vrehaman • 0

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758

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tweedeseq

7.3 years ago keever1 • 0

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618

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tweeDEseq tweeDEseq

updated 9.0 years ago by Gonzalez Ruiz, Juan Ramon ▴ 20 • written 9.0 years ago by Ryan C. Thompson 7.8k

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edgeR tweeDEseq edgeR tweeDEseq

9.0 years ago Gonzalez Ruiz, Juan Ramon ▴ 20

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1.2k

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Normalization edgeR tweeDEseq Normalization edgeR tweeDEseq

updated 10.5 years ago by Robert Castelo ★ 2.9k • written 10.5 years ago by Sermsawat Tunlaya-anukit ▴ 90

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Answer: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k

> In a typical regression, I would just add them to the model when estimating my coefficients of interest Why not do the same with limma? …

Comment: TPM normalization starting with read counts by Gordon Smyth 46k

> So you think my method in TPM normalization that I introduced above is not good? Your computation of RPKM using edgeR is fine, provided …

Comment: error in package GenVisR while installing by 堃 • 0

Package ‘FField’ was removed from the CRAN repository.[enter link description here][1] I installed FField by using remotes::install_github…

Comment: DESeq 2 failes to load by Ruggero • 0

This solved the error, in case someone else is having compilation errors from installing RSQllite: install.packages('RSQLite', repos='http…

Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.3k

A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'. This hack is nothing more than m…

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Answer: How to remove dendrogram from pheatmaps?

A: conceptual question about FDR, FDR adjusted p-value and q-value

A: How to select summit size for histone ChiP-Seq in Diffbind

Answer: Unable to download supplementary files from GSE146963 using GEOquery

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Teacher to Guido Hooiveld ★ 3.3k

Popular Question to Marwaha, Shruti marwahsi ▴ 40