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Comment: No differentially expressed genes after DESeq
I'd remove any of those "meta" features from the data. ``` ## drop features starting with "__" idx_metafeature <- stringr::str_detect(rown…
Comment: DEGreport installation help
Okay, thank you for the insight! Unfortunately I'm using a Mac.
Answer: DEGreport installation help
James W. MacDonald
The `lasso2` package has been archived because the maintainer didn't get something done in time. Or something. If you are willing to take t…
Comment: Comparing different method for DESEQ2
Are the same transcriptome annotations used for all the indexes and by HTSEQ? That could be a source of variance. Also, please clarify the …
Comment: Efficiently working with HDF5-backed SingleCellExperiments
Following back up. I reformatted to `chunkdim=c(1e3L, 1e3L)` and the summarization job with all else the same (24 cores, 1e9 blocks) took a…
Answer: Efficiently working with HDF5-backed SingleCellExperiments
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
Comment: GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
Answer: " 'end' must be >= 'start' - 1" error in cn.mops
[gwascat] Updated GWAS catalog from file
Kasper Daniel Hansen
Stephanie M. Gogarten
MSKCC | New York, NY,
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