updated 7.7 years ago by
Dan Tenenbaum
★
8.2k
•
written 7.7 years ago by
svlachavas
▴
810
2
votes
5
replies
5.0k
views
Recent ...
Replies
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
Hervé Pagès
16k
Available since last Friday. See https://bioconductor.org/packages/3.17/DelayedArray
Comment: Diffbind "No genome detected"
by
James W. MacDonald
63k
The error you see comes from an internal function called `pv.genome` that inspects the header of your BAM file and tries to infer the genom…
Comment: Diffbind "No genome detected"
by
kyliecode
•
0
Hi James,
Thanks for your reply!
For the blacklist, I just used the one provided by DiffBind, which is "DBA_BLACKLIST_MM10".
For the grey…
Answer: DESeq2 on multilevel design variable
by
ATpoint
★
2.9k
You can make your life simply and use a contrast for each, for example:
```r
library(DESeq2)
dds <- makeExampleDESeqDataSet()
diagnosis <…
Answer: Diffbind "No genome detected"
by
James W. MacDonald
63k
You can specify the greylist in the same manner as the blacklist, which should fix your problem.
Votes
Awards
• All
Teacher to
James W. MacDonald
63k
Popular Question to
kyliecode
•
0
Scholar to
Mike Smith
★
6.0k
Popular Question to
Martin Morgan
25k
Locations
• All
France, just now
Melbourne, Australia, 13 minutes ago
United States, 18 minutes ago
WEHI, Melbourne, Australia, 43 minutes ago
United States, 45 minutes ago
France, just now
Melbourne, Australia, 13 minutes ago
United States, 18 minutes ago
WEHI, Melbourne, Australia, 43 minutes ago
United States, 45 minutes ago
Traffic: 318 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6