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Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt vignette
updated 9 months ago by ▴ 10 • written 2.2 years ago by ▴ 10
1 result • Page 1 of 1
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Answer: Differential Splicing using edgeR by James W. MacDonald 58k
I believe the help page for `diffSpliceDGE` accurately represents what you should be using as input. ``` ## after running > example(…
Comment: TSSEscore function in ATACseqQC package by Ou, Jianhong ★ 1.3k
Hi Yu-Yu, May I know the version of ATACseqQC? Thank you. Jianhong.
Comment: using the goana function from edgeR by Gordon Smyth 44k
`goana` does an over-representation analysis so the User's Guide wording seems correct. If you don't use the extra capabilities of `goana` …
Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ? by Hervé Pagès 15k
Yup, `getBSgenome()`.
Comment: using the goana function from edgeR by David Rengel ▴ 70
Thanks a lot Gordon, I misunderstood the way the analysis are performed, I see now it works the way topGO does. It is nice to have annotat…
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C: edgeR design matrix and contrasts: how to make contrast between groups that aren
Answer: Why is "SimpleList" not inheriting "list" ?
C: Reading gff files in R
A: Reading gff files in R
Comment: Warning messages on Apple M1 BigSur
Awards • All
Scholar to James W. MacDonald 58k
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to Hervé Pagès 15k
Popular Question to Sebastian Hesse ▴ 50
Popular Question to Gordon Smyth 44k
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