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EGSEA gene set testing vooma limma voom gsea

updated 10 months ago by Chris ▴ 20 • written 8.2 years ago by Pekka Kohonen ▴ 190

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Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by Wolfgang RAFFELSBERGER ▴ 140

Yes, rtools4.4 is installed (and works for making my own packages)

Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by Wolfgang RAFFELSBERGER ▴ 140

Thank you, this solved the problem !

Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene by ATpoint ★ 4.7k

I cannot reproduce this on Windows 11. Is rtools installed to allow compilation from source on Windows?

Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana by ATpoint ★ 4.7k

You've asked this at biostars where it belongs. This is not directly related to Bioconductor.

Comment: Conumee with EPICv2 Segment function by zpingfeng • 0

I have the same issue too for the analysis lack of sample replicates. It was fine for the samples with replicates

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