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wavClusteR
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wavclusters function fails to works from highConfSub calculated from the default supplied parameters, instead it only works on highConfSub calculat…
wavClusteR
16 months ago
xiaoleiusc
• 0
0
votes
0
replies
251
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Issue with wavClusteR
wavClusteR
3.2 years ago
btharada
• 0
0
votes
1
reply
774
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What tool for reads alignment are prefereble for wavClusteR input bams?
wavcluster
updated 6.2 years ago by
federico.comoglio
▴ 100 • written 6.2 years ago by
alexandr.gopanenko
▴ 40
1
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4
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1.0k
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Error with wavClusteR annotateClusters function
wavcluster
updated 6.7 years ago by
federico.comoglio
▴ 100 • written 6.8 years ago by
S.k
▴ 10
3
votes
14
replies
2.2k
views
Errors using wavClusteR package - "range cannot be determined from the supplied arguments (too many NAs)"
wavClusteR
updated 6.8 years ago by
federico.comoglio
▴ 100 • written 6.8 years ago by
S.k
▴ 10
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Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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