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Comment: ComplexHeatmap - Heatmap function within a for loop
by
krushnach80
• 0
I'm trying to save list of heatmaps after doing this hm_lst<-cmplx_ht(list_of_files,metadata) The to save I tried something like thi…
Answer: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
by
James W. MacDonald
60k
When a function is deprecated, that usually doesn't mean that the author/maintainer just changed the name of a function. That's always poss…
Answer: Cannot Install WGCNA
by
shepherl
3.1k
If you first install preprocessCore and then try again? `BiocManager::install("preprocessCore")` `BiocManager::install("WGCNA")` …
Answer: Why Negative value from GSVA
by
Robert Castelo
★ 2.9k
hi, i guess when you say that you are using "RNA-Seq Row Count data" you mean "RNA-Seq raw count data" in the sense that the count data is …
Comment: Low Differentially Bound Sites found with DiffBind
by
gannoncottone
• 0
I will look into plots of the data more thoroughly and see if any of the trends fit the reasons for low differential binding sites! Thank y…
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Answer: Why Negative value from GSVA
Mapping patient dataset onto control dataset
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
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