Bioconductor Wide format

Showing : wide format • reset

8

votes

12

replies

8.2k

views

multiassayexperiment wide format TCGA

updated 7.0 years ago by Marcel Ramos 700 • written 7.0 years ago by mario.zanfardino ▴ 160

4

votes

2

replies

1.6k

views

multiassayexperiment summarizedexperiment wide format

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by mario.zanfardino ▴ 160

2 results • Page 1 of 1

Recent ...

Replies

Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k

Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Votes

Comment: readDNAStringSet with non DNA characters

Awards • All