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multiassayexperiment wide format TCGA

updated 7.2 years ago by Marcel Ramos 700 • written 7.2 years ago by mario.zanfardino ▴ 160

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multiassayexperiment summarizedexperiment wide format

updated 7.4 years ago by Levi Waldron ★ 1.1k • written 7.4 years ago by mario.zanfardino ▴ 160

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Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k

There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …

Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60

Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!

Comment: Co-occurrence Network Analysis between Algae and Bacteria by Stefano Mangiola ▴ 40

Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…

Answer: DESeq2 design for haplotype MPRA by aimesd808 • 0

I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/

Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp" by Kevin Blighe ★ 4.0k

My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…

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Comment: Error installing Seqinfo

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