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Function Request for Rsubread or tximport: parsing command-line featureCounts output
tximport Rsubread
updated 23 months ago by ★ 4.1k • written 23 months ago by ▴ 10
1
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1
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715
views
"Mixed" in romer output
limma romer
updated 6.2 years ago by 65k • written 6.2 years ago by ▴ 10
1
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3
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1.2k
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Comparing Expression Ratios between two genes
limma
updated 6.2 years ago by 50k • written 6.3 years ago by ▴ 10
0
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1
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846
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Illumina array weights--arrayWeights or beadCountWeights
limma arrayweights
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 10
0
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0
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866
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Optimizing the deepSplit parameter in dynamicTreeCut
dynamicTreeCut
6.9 years ago johnmcma ▴ 10
2
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1
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2.3k
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Limma: difference between groups of paired data
limma paired analysis limma
updated 2.2 years ago by • 0 • written 7.0 years ago by ▴ 10
3
votes
8
replies
3.4k
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Using DESeq2 with Nanostring data (for VST only)
deseq2 variancestabilizingtransformation nanostring
updated 7.1 years ago by 41k • written 7.1 years ago by ▴ 10
6
votes
4
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4.8k
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Is there any point to TMM-normalize TPM prior to limma-voom?
voom limma-voom tximport edger
updated 7.1 years ago by ★ 7.9k • written 7.1 years ago by ▴ 10
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