Bioconductor Romer

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614

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limma romer

updated 5.6 years ago by James W. MacDonald 63k • written 5.6 years ago by johnmcma ▴ 10

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1.3k

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limma proteomics camera mroast romer

updated 7.0 years ago by Gordon Smyth 48k • written 7.0 years ago by natalia.pietrosemoli • 0

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4.8k

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limma edger mroast romer camera

updated 7.6 years ago by Steve Lianoglou 13k • written 7.6 years ago by maltethodberg ▴ 170

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1.1k

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limma romer roast

updated 7.7 years ago by Gordon Smyth 48k • written 7.7 years ago by biominer ▴ 10

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7.2k

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limma romer gene set analysis

updated 7.9 years ago by Gordon Smyth 48k • written 7.9 years ago by jacorvar ▴ 40

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2.6k

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romer mroast limma

updated 8.0 years ago by Gordon Smyth 48k • written 8.0 years ago by Ilario De Toma ▴ 10

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1.2k

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limma romer msigdb

updated 8.1 years ago by James W. MacDonald 63k • written 8.1 years ago by Jon Manning ▴ 40

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1.9k

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deseq2 edger limma romer camera

updated 8.1 years ago by Gordon Smyth 48k • written 8.1 years ago by phil.chapman ▴ 150

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3.8k

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limma romer

updated 8.1 years ago by Gordon Smyth 48k • written 8.1 years ago by Jon Manning ▴ 40

9 results • Page 1 of 1

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Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

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