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limma romer

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by johnmcma ▴ 10

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limma proteomics camera mroast romer

updated 8.0 years ago by Gordon Smyth 51k • written 8.0 years ago by natalia.pietrosemoli • 0

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6.1k

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limma edger mroast romer camera

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by maltethodberg ▴ 180

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limma romer roast

updated 8.7 years ago by Gordon Smyth 51k • written 8.7 years ago by biominer ▴ 10

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8.2k

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limma romer gene set analysis

updated 8.9 years ago by Gordon Smyth 51k • written 8.9 years ago by jacorvar ▴ 40

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romer mroast limma

updated 9.0 years ago by Gordon Smyth 51k • written 9.0 years ago by Ilario De Toma ▴ 10

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limma romer msigdb

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Jon Manning ▴ 40

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deseq2 edger limma romer camera

updated 9.1 years ago by Gordon Smyth 51k • written 9.1 years ago by phil.chapman ▴ 150

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4.5k

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limma romer

updated 9.1 years ago by Gordon Smyth 51k • written 9.1 years ago by Jon Manning ▴ 40

9 results • Page 1 of 1

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Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …

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Answer: Are transformed values from rlog /vst log2 normalized counts?

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable

Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical

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Scholar to James W. MacDonald 67k