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1.3k
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Function Request for Rsubread or tximport: parsing command-line featureCounts output
tximport
Rsubread
updated 2.6 years ago by
ATpoint
★ 4.6k • written 2.6 years ago by
johnmcma
▴ 10
1
vote
1
reply
848
views
"Mixed" in romer output
limma
romer
updated 6.8 years ago by
James W. MacDonald
67k • written 6.8 years ago by
johnmcma
▴ 10
0
votes
0
replies
1.5k
views
Comment:
C: Comparing Expression Ratios between two genes
6.9 years ago
johnmcma
▴ 10
0
votes
0
replies
1.5k
views
Comment:
C: Comparing Expression Ratios between two genes
6.9 years ago
johnmcma
▴ 10
1
vote
3
replies
1.5k
views
Comparing Expression Ratios between two genes
limma
updated 6.9 years ago by
Gordon Smyth
52k • written 6.9 years ago by
johnmcma
▴ 10
1
vote
3
replies
11k
views
Answer:
A: DESeq2, no replicate
7.2 years ago
johnmcma
▴ 10
0
votes
1
reply
980
views
Illumina array weights--arrayWeights or beadCountWeights
limma
arrayweights
updated 7.2 years ago by
Gordon Smyth
52k • written 7.2 years ago by
johnmcma
▴ 10
0
votes
0
replies
1.0k
views
Optimizing the deepSplit parameter in dynamicTreeCut
dynamicTreeCut
7.5 years ago
johnmcma
▴ 10
2
votes
1
reply
2.5k
views
Limma: difference between groups of paired data
limma paired analysis
limma
updated 2.8 years ago by
Maggie
• 0 • written 7.6 years ago by
johnmcma
▴ 10
0
votes
0
replies
3.8k
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Comment:
C: Using DESeq2 with Nanostring data (for VST only)
7.7 years ago
johnmcma
▴ 10
0
votes
1
reply
3.8k
views
Comment:
C: Using DESeq2 with Nanostring data (for VST only)
7.7 years ago
johnmcma
▴ 10
0
votes
2
replies
3.8k
views
Comment:
C: Using DESeq2 with Nanostring data (for VST only)
7.7 years ago
johnmcma
▴ 10
3
votes
8
replies
3.8k
views
Using DESeq2 with Nanostring data (for VST only)
deseq2
variancestabilizingtransformation
nanostring
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
johnmcma
▴ 10
0
votes
1
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5.2k
views
Comment:
C: Is there any point to TMM-normalize TPM prior to limma-voom?
7.7 years ago
johnmcma
▴ 10
6
votes
4
replies
5.2k
views
Is there any point to TMM-normalize TPM prior to limma-voom?
voom
limma-voom
tximport
edger
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
johnmcma
▴ 10
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