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Showing :
gene
•
reset
0
votes
0
replies
114
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
7 weeks ago
Priya
• 0
0
votes
2
replies
160
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
8 weeks ago • updated 7 weeks ago
Liliian
• 0
3
votes
2
replies
190
views
please resolve the issue
gene
ExpressionData
updated 12 weeks ago by
James W. MacDonald
63k • written 12 weeks ago by
sonal
• 0
1
vote
4
replies
400
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
7 months ago
faiza
• 0
0
votes
1
reply
351
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 9 months ago by
andres.firrincieli
▴ 50 • written 9 months ago by
Recep
▴ 20
0
votes
2
replies
2.2k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 14 months ago by
kent.riemondy
• 0 • written 15 months ago by
svenbioinf
• 0
0
votes
2
replies
981
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
15 months ago
beslinail
• 0
0
votes
0
replies
331
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
19 months ago
AZ
▴ 30
6
votes
7
replies
1.4k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 19 months ago by
James W. MacDonald
63k • written 19 months ago by
Caitlin
▴ 50
1
vote
2
replies
480
views
gene ontologies for a set of genes
gene
ontology
22 months ago
Bogdan
▴ 660
0
votes
0
replies
392
views
TFutils database
TFutils
mouse
gene
convert
2.0 years ago
nicocillari
• 0
0
votes
2
replies
688
views
I want to use global test.
gene
r
clst
rpy
globaltest
2.2 years ago
Kim
• 0
1
vote
3
replies
1.1k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 2.5 years ago by
Ram
▴ 180 • written 2.6 years ago by
sijing.gsj
• 0
0
votes
3
replies
642
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 3.1 years ago by
markus.riester
▴ 130 • written 3.1 years ago by
twtoal
▴ 10
0
votes
4
replies
617
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 3.2 years ago by
Kevin Blighe
3.8k • written 3.2 years ago by
emisecherre
• 0
2
votes
4
replies
633
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
3.2 years ago
emisecherre
• 0
9
votes
10
replies
953
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
3.8 years ago • updated 3.3 years ago
omarrafiqued
▴ 50
1
vote
4
replies
772
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 3.8 years ago by
swbarnes2
★ 1.2k • written 3.8 years ago by
angel.campos
• 0
5
votes
5
replies
1.2k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 2.3 years ago by
Dario Strbenac
★ 1.5k • written 3.8 years ago by
amgtech
▴ 10
2
votes
5
replies
869
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
3.9 years ago
miriam.mueller
• 0
3
votes
3
replies
753
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 3.9 years ago by
James W. MacDonald
63k • written 3.9 years ago by
t.bergmann
• 0
6
votes
2
replies
1.7k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 4.1 years ago by
Gordon Smyth
47k • written 4.1 years ago by
Raito92
▴ 60
0
votes
2
replies
3.0k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
venkatarao142152
• 0
0
votes
5
replies
5.7k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 7.6 years ago by
Michael Love
40k • written 7.6 years ago by
amyfm
▴ 10
3
votes
2
replies
3.1k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 8.2 years ago by
Kamil Slowikowski
▴ 30 • written 8.2 years ago by
pankajnarula84
▴ 20
25 results • Page
1 of 1
Recent ...
Replies
Answer: multiple filters in biomaRt
by
RuBBiT0
▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected"
by
kyliecode
• 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio)
by
Michael Love
40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode
by
Habil Zare
▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file
by
jenniferbrowngates
• 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Votes
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
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Rory Stark
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