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Answer: Answer: Difference between vst() and varianceStabilizingTransform()
4 months ago Kevin Blighe ★ 3.9k
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315
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Answer: Answer: DEG by deseq2 by Race
8 months ago Kevin Blighe ★ 3.9k
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1
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1.1k
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Answer: Answer: enhanced volcano , different -log10pvalue of the same gene
11 months ago Kevin Blighe ★ 3.9k
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1
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1.6k
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Answer: Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
12 months ago Kevin Blighe ★ 3.9k
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0
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531
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Answer: Answer: BioC packages in cancer genomics
13 months ago Kevin Blighe ★ 3.9k
2
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0
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984
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Answer: Answer: Overlay points with EnhancedVolcano R
14 months ago Kevin Blighe ★ 3.9k
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0
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550
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Answer: Answer: Only display positive FC on volcano plot
14 months ago Kevin Blighe ★ 3.9k
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1
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1.1k
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Answer: Answer: Adding ellipse in PCAtools biplot
15 months ago Kevin Blighe ★ 3.9k
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0
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938
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Answer: Answer: PCA input data from DRAGEN RNA pipeline
17 months ago Kevin Blighe ★ 3.9k
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0
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499
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Answer: Answer: PCA plot, plus sign?
17 months ago Kevin Blighe ★ 3.9k
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1
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853
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Answer: Answer: Is it possible for the legend labels to be different from the Colcustom names?
18 months ago Kevin Blighe ★ 3.9k
1
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0
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606
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Answer: Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
18 months ago Kevin Blighe ★ 3.9k
1
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1
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686
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Answer: Answer: Second covariate
18 months ago Kevin Blighe ★ 3.9k
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0
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1.6k
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Answer: Answer: Enhanced Volcano Error when drawing connectors
19 months ago Kevin Blighe ★ 3.9k
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1
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1.0k
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Answer: Answer: color scale ggcyto::autoplot
19 months ago Kevin Blighe ★ 3.9k
1
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1
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2.5k
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Answer: Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
23 months ago Kevin Blighe ★ 3.9k
1
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1
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8.2k
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Answer: Answer: is it possible to use TPM in DESeq2 ?
23 months ago Kevin Blighe ★ 3.9k
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0
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1.8k
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Answer: Answer: DESeq2- how to remove NA values
24 months ago Kevin Blighe ★ 3.9k
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0
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568
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Answer: Answer: Volcano plots
24 months ago Kevin Blighe ★ 3.9k
1
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1
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1.4k
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Answer: Answer: Ensembl non responsive
2.0 years ago Kevin Blighe ★ 3.9k
1
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0
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1.4k
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Answer: Answer: How to open up a zip file?
2.0 years ago Kevin Blighe ★ 3.9k
0
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1
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1.6k
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Answer: Answer: Issue with selectively labelling genes in the Enhanced Volcano package
2.3 years ago Kevin Blighe ★ 3.9k
1
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1
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1.5k
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Answer: Answer: Enhancedvolcano labels superimposed on points
2.3 years ago Kevin Blighe ★ 3.9k
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1
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1.2k
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Answer: Answer: 95% confidence intervals for PCA in DESEQ2
2.4 years ago Kevin Blighe ★ 3.9k
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1
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1.8k
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Answer: Answer: EnhancedVolcano plot - labels
2.6 years ago Kevin Blighe ★ 3.9k
4
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1
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4.7k
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Answer: Answer: ylim and xlim in Enhanced Volcano
2.7 years ago Kevin Blighe ★ 3.9k
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1
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14k
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Answer: Answer: hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
2.7 years ago Kevin Blighe ★ 3.9k
1
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1
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1.4k
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Answer: Answer: Confused about using ComBat_seq with voom and limma? Should run batch as a cova
2.7 years ago Kevin Blighe ★ 3.9k
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1
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1.2k
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Answer: Answer: Batch-corrected expression matrix NOT on a log2 scale
2.7 years ago Kevin Blighe ★ 3.9k
3
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0
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859
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Answer: Answer: Compare two samples by Deseqs
2.7 years ago Kevin Blighe ★ 3.9k
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1
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3.7k
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Answer: Answer: extracting the KEGG pathway for a set of genes
2.7 years ago Kevin Blighe ★ 3.9k
1
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1
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2.4k
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Answer: Answer: Combat and dds Object
2.7 years ago Kevin Blighe ★ 3.9k
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0
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1.1k
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Answer: Answer: Help With TCGAbiolinks package
2.7 years ago Kevin Blighe ★ 3.9k
0
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1
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6.4k
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Answer: Answer: Problems with installation of 'phyloseq
2.7 years ago Kevin Blighe ★ 3.9k
0
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0
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807
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Answer: Answer: python and R
2.7 years ago Kevin Blighe ★ 3.9k
1
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1
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3.5k
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Answer: Answer: Using R BioMart getting orthologus genes between two species
2.8 years ago Kevin Blighe ★ 3.9k
1
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1
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2.6k
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Answer: Answer: mapping mouse ENSEMBL ids to human gene symbol
2.8 years ago Kevin Blighe ★ 3.9k
2
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1
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3.1k
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Answer: Answer: A permanent error in DESeq2
2.8 years ago Kevin Blighe ★ 3.9k
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0
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502
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Answer: Answer: Identifying sample considered in each group
2.8 years ago Kevin Blighe ★ 3.9k
0
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0
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598
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Answer: Answer: Group-specific condition effect
2.8 years ago Kevin Blighe ★ 3.9k
0
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1
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2.3k
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Answer: Answer: DESeq2 question: why I got discrepancy results for DEGs when using different way
2.8 years ago Kevin Blighe ★ 3.9k
1
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2
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2.1k
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Answer: Answer: DESeq2 - groups with biological replicates from the same patient
2.8 years ago Kevin Blighe ★ 3.9k
0
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1
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1.8k
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Answer: Answer: How to fix .bam file that was diagnosed as "MISSING_READ_GROUP" by Picard Valida
2.8 years ago Kevin Blighe ★ 3.9k
0
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0
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685
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Answer: Answer: Purpose of seqtabNoC
2.8 years ago Kevin Blighe ★ 3.9k
0
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1
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766
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Answer: Answer: Installing Packages repeatedly
2.8 years ago Kevin Blighe ★ 3.9k
2
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0
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4.8k
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Answer: Answer: EnhancedVolcano Label Question
2.8 years ago Kevin Blighe ★ 3.9k
1
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1
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3.6k
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Answer: Answer: Error in SingleR, no common genes between 'test' and 'ref'
2.8 years ago Kevin Blighe ★ 3.9k
0
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0
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1.6k
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Answer: Answer: Network analysis: Is low confidence score valid (STRING DB)
2.9 years ago Kevin Blighe ★ 3.9k
0
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1
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1.1k
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Answer: Answer: TCGA data Query (GDCquery): external_gene_name " are missing
2.9 years ago Kevin Blighe ★ 3.9k
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0
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1.5k
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Answer: Answer: Doing differential expression using FPKM , samples don't have replication
2.9 years ago Kevin Blighe ★ 3.9k
301 results • Page 1 of 7
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