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Comment: C: Limma: advice needed for best approach for joint paired and unpaired analyses in
11.0 years ago Guido Hooiveld ★ 4.1k
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Comment: C: How to remove IEA genes from list of GO terms?
11.1 years ago Guido Hooiveld ★ 4.1k
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1.7k
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How to remove IEA genes from list of GO terms?
go annotation organismdb
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 4.1k
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805
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package for iAUC determination using gene expression data?
11.6 years ago Guido Hooiveld ★ 4.1k
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4.1k
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Comment: C: Running the GSEA algorithm
11.6 years ago Guido Hooiveld ★ 4.1k
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queries re Voom + Limma for RNA-seq data
Microarray Microarray
11.6 years ago Guido Hooiveld ★ 4.1k
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Comment: C: QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
11.7 years ago Guido Hooiveld ★ 4.1k
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Comment: C: QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
11.7 years ago Guido Hooiveld ★ 4.1k
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Comment: C: QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
11.7 years ago Guido Hooiveld ★ 4.1k
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2.6k
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QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
Alignment Rattus norvegicus BSgenome BSgenome QuasR Alignment Rattus norvegicus BSgenome
updated 11.7 years ago by 16k • written 11.7 years ago by ★ 4.1k
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1
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4.9k
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Comment: C: error ReadAffy
11.8 years ago Guido Hooiveld ★ 4.1k
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2.5k
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Comment: C: how to extract probes for a probeset from PdInfo database?
11.8 years ago Guido Hooiveld ★ 4.1k
0
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3
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2.5k
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how to extract probes for a probeset from PdInfo database?
miRNA cdf affy miRNA cdf affy
updated 11.8 years ago by ★ 4.3k • written 11.8 years ago by ★ 4.1k
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0
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1.1k
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limma - genas: unexpected warnings
12.0 years ago Guido Hooiveld ★ 4.1k
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2
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1.1k
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problem with creating array annotation package
Microarray Annotation ChipName Microarray Annotation ChipName
updated 12.2 years ago by ★ 3.9k • written 12.2 years ago by ★ 4.1k
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2.5k
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Comment: C: problem with makeOrgPackageFromNCBI (for Chinese hamster)
12.2 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.7k
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Comment: C: problem generating Chinese hamster txdb from GFF file
12.2 years ago Guido Hooiveld ★ 4.1k
0
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2
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2.5k
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problem with makeOrgPackageFromNCBI (for Chinese hamster)
Annotation GO db0 PROcess Annotation GO db0 PROcess
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ★ 4.1k
0
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1
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2.7k
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Comment: C: problem generating Chinese hamster txdb from GFF file
12.3 years ago Guido Hooiveld ★ 4.1k
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5
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2.7k
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problem generating Chinese hamster txdb from GFF file
GO GenomicFeatures GO GenomicFeatures
updated 3 months ago by • 0 • written 12.3 years ago by ★ 4.1k
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1
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2.9k
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Answer: A: limma: one sample t-test + covariate
12.4 years ago Guido Hooiveld ★ 4.1k
0
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2
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2.9k
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limma: one sample t-test + covariate
limma limma
12.4 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.1k
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Comment: C: ERCC spike-in probes in
12.4 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.7k
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minfi: Meth and Unmeth = 0 resulting in beta = NaN?
Normalization convert minfi Normalization convert minfi
updated 12.5 years ago by ★ 6.5k • written 12.5 years ago by ★ 4.1k
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1
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2.1k
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Comment: C: barcode with custom CDF
12.6 years ago Guido Hooiveld ★ 4.1k
0
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0
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874
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Answer: A: Estimate how much a factor contributes to the variation
12.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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2.0k
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Answer: A: Testing for logFC significantly larger than threshold; or: calculating confidenc
12.7 years ago Guido Hooiveld ★ 4.1k
0
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1
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9.4k
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Comment: C: Analysis of Affymetrix Mouse Gene 2.0 ST arrays
12.7 years ago Guido Hooiveld ★ 4.1k
0
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1
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9.4k
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Comment: C: Analysis of Affymetrix Mouse Gene 2.0 ST arrays
12.7 years ago Guido Hooiveld ★ 4.1k
0
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0
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713
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annotationTools: character vector clean-up
convert convert
12.7 years ago Guido Hooiveld ★ 4.1k
0
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2
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946
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annotationTools: character vector clean-up
convert convert
updated 12.7 years ago by ★ 7.9k • written 12.7 years ago by ★ 4.1k
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0
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2.5k
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Comment: C: KEGG REST: retrieving genes
12.8 years ago Guido Hooiveld ★ 4.1k
0
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2
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2.5k
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KEGG REST: retrieving genes
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ★ 4.1k
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2.5k
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Answer: A: is it possible to find sample batch # in CEL files?
12.8 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.8k
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Illumina 450K + CHARM/dmrFinder
Normalization minfi Normalization minfi
13.0 years ago Guido Hooiveld ★ 4.1k
0
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0
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851
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Answer: A: annotation by drosophila 2db 2.7.1
13.0 years ago Guido Hooiveld ★ 4.1k
0
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0
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1.7k
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Comment: C: SVA: problem loading on Windows
13.0 years ago Guido Hooiveld ★ 4.1k
0
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2
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1.7k
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SVA: problem loading on Windows
sva sva
updated 13.0 years ago by ★ 6.5k • written 13.0 years ago by ★ 4.1k
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0
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884
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unbiased filtering of paired dataset
13.1 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.2k
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Comment: C: problem with 'FDb.InfiniumMethylation.hg19'
13.1 years ago Guido Hooiveld ★ 4.1k
0
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5
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2.2k
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problem with 'FDb.InfiniumMethylation.hg19'
Annotation Annotation
updated 13.1 years ago by ★ 4.2k • written 13.1 years ago by ★ 4.1k
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1.6k
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Answer: A: Regarding CDF & annotation package
13.1 years ago Guido Hooiveld ★ 4.1k
0
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1
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1.2k
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interpretation & visualization methylation data (illum 450k)
GenomicRanges minfi GenomicRanges minfi
updated 13.1 years ago by ★ 6.5k • written 13.1 years ago by ★ 4.1k
0
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1
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1.6k
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Comment: C: limma: is it best to always include paired structure (sibship) in design?
13.2 years ago Guido Hooiveld ★ 4.1k
0
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4
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1.6k
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limma: is it best to always include paired structure (sibship) in design?
updated 13.2 years ago by 53k • written 13.2 years ago by ★ 4.1k
0
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1
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4.8k
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Answer: A: Openening qPCR file from ABI
13.3 years ago Guido Hooiveld ★ 4.1k
0
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1
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2.4k
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Answer: A: package ‘hugene10stv1.r3cdf’ or ‘hugene10stv1’ is not available
13.4 years ago Guido Hooiveld ★ 4.1k
0
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0
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2.1k
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Comment: C: Unable to perform GCRMA/RMA with cdf file 'mogene11stv1mmentrezgcdf'
13.5 years ago Guido Hooiveld ★ 4.1k
0
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4
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1.4k
views
frmaTools: error with 'convertPlatform'
cdf affy convert cdf affy convert
updated 13.5 years ago by ▴ 830 • written 13.5 years ago by ★ 4.1k
0
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1
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1.4k
views
Comment: C: frmaTools: error with 'convertPlatform'
13.5 years ago Guido Hooiveld ★ 4.1k
723 results • Page 12 of 15
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