Biostar Organismdb

Showing : organismdb • reset

vote

replies

738

views

annotation organismdb

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by Guido Hooiveld ★ 3.2k

votes

replies

1.5k

views

annotationhub organismdb orgdb unsupported organisms

updated 6.0 years ago by Valerie Obenchain ★ 6.7k • written 6.0 years ago by Guido Hooiveld ★ 3.2k

votes

replies

1.4k

views

promoter granges refseq ucsc organismdb

updated 6.2 years ago by Robert Castelo ★ 2.8k • written 6.2 years ago by efoss ▴ 10

votes

replies

1.9k

views

GO OrganismDb ggbio GO OrganismDb ggbio

updated 7.1 years ago by dalloliogm ▴ 40 • written 7.4 years ago by Georg Otto ▴ 120

vote

replies

3.3k

views

annotationdbi annotation organismdb loadnamespace

7.2 years ago milorobertsmith • 0

votes

replies

802

views

go annotation organismdb

updated 7.3 years ago by James W. MacDonald 58k • written 7.3 years ago by Guido Hooiveld ★ 3.2k

vote

replies

1.3k

views

organismdb annotationdbi annotationforge

updated 7.3 years ago by Marc Carlson ★ 7.2k • written 7.3 years ago by artur ▴ 80

votes

944

views

Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 8.1 years ago by Matthias Lienhard ▴ 220 • written 8.1 years ago by Hervé Pagès 15k

votes

replies

1.4k

views

Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

8.1 years ago Hervé Pagès 15k

votes

replies

1.4k

views

GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

8.1 years ago Hervé Pagès 15k

10 results • Page 1 of 1

Recent ...

Replies

Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970

`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.

Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660

I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…

Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k

This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…

Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0

Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…

Answer: DiffBind issue: zero values for all peaks in one chromosome by Rory Stark ★ 4.3k

Losing the reads for one tissue on one chromosome doesn't sound too good! I notice that you are using `DiffBind_3.0`, which is out of da…

Votes

Emirical Bayesian shrinkage for dispertion/LFC estimation

C: Emirical Bayesian shrinkage for dispertion/LFC estimation

A: Emirical Bayesian shrinkage for dispertion/LFC estimation

Comment: airway package not compatible with R version 4.1.2 (2021-11-01)

Comment: universalmotif, question about enrich_motifs function and number of hits returne

Awards • All

Popular Question to floriandeckert ▴ 30

Popular Question to mikhael.manurung ▴ 230

Scholar to Gordon Smyth 44k

Popular Question to Stephanie M. Gogarten ▴ 820

Teacher to Aaron Lun ★ 27k

Locations • All

CRUK, Cambridge, UK, 4 minutes ago

Portugal, 4 minutes ago

Spain, 20 minutes ago

National Cancer Institute and University of Maryland, 25 minutes ago

EMBL Heidelberg / de.NBI, 34 minutes ago

Traffic: 452 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

version 2.3.6