Biostar Organismdb

Showing : organismdb • reset

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634

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annotation organismdb

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by Guido Hooiveld ★ 3.0k

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1.3k

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annotationhub organismdb orgdb unsupported organisms

updated 5.5 years ago by Valerie Obenchain ★ 6.7k • written 5.5 years ago by Guido Hooiveld ★ 3.0k

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1.2k

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promoter granges refseq ucsc organismdb

updated 5.7 years ago by Robert Castelo ★ 2.7k • written 5.7 years ago by efoss ▴ 10

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1.8k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 6.6 years ago by dalloliogm ▴ 40 • written 7.0 years ago by Georg Otto ▴ 120

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3.3k

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annotationdbi annotation organismdb loadnamespace

6.7 years ago milorobertsmith • 0

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742

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go annotation organismdb

updated 6.8 years ago by James W. MacDonald 57k • written 6.8 years ago by Guido Hooiveld ★ 3.0k

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1.2k

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organismdb annotationdbi annotationforge

updated 6.9 years ago by Marc Carlson ★ 7.2k • written 6.9 years ago by artur ▴ 80

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882

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 7.6 years ago by Matthias Lienhard ▴ 220 • written 7.6 years ago by Hervé Pagès 15k

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1.4k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

7.6 years ago Hervé Pagès 15k

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1.4k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

7.6 years ago Hervé Pagès 15k

10 results • Page 1 of 1

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Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k

It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…

Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0

The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…

Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k

What messages do you receive when you try to install the *GenomeInfoDbData* package?

Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890

Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …

Comment: Combining HTSeq and RNA-SeQ for differential analysis by ATpoint ▴ 710

The fact that you don't have raw data indicate that disease and healthy conditions come from different datasets or studies, hence there is …

Votes

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Awards • All

Scholar to Leonardo Collado Torres ▴ 890