Biostar Organismdb

Showing : organismdb • reset

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925

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annotation organismdb

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by Guido Hooiveld ★ 3.5k

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1.8k

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annotationhub organismdb orgdb unsupported organisms

updated 7.0 years ago by Valerie Obenchain ★ 6.7k • written 7.0 years ago by Guido Hooiveld ★ 3.5k

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1.8k

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promoter granges refseq ucsc organismdb

updated 7.2 years ago by Robert Castelo ★ 3.0k • written 7.2 years ago by efoss ▴ 10

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2.1k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 8.2 years ago by dalloliogm ▴ 40 • written 8.5 years ago by Georg Otto ▴ 120

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3.6k

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annotationdbi annotation organismdb loadnamespace

8.2 years ago milorobertsmith • 0

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936

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go annotation organismdb

updated 8.3 years ago by James W. MacDonald 62k • written 8.3 years ago by Guido Hooiveld ★ 3.5k

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1.6k

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organismdb annotationdbi annotationforge

updated 8.4 years ago by Marc Carlson ★ 7.2k • written 8.4 years ago by artur ▴ 80

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1.1k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 9.1 years ago by Matthias Lienhard ▴ 220 • written 9.1 years ago by Hervé Pagès 16k

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1.6k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

9.2 years ago Hervé Pagès 16k

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1.7k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

9.2 years ago Hervé Pagès 16k

10 results • Page 1 of 1

Recent ...

Replies

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40

Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k

Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…

Comment: Atena package - error (new user) by lalanis1 • 0

Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani

Comment: Nested paired design with covariates in limma by Gordon Smyth 47k

Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…

Comment: Question about GWASTools gdsSubset by Stephanie M. Gogarten ▴ 840

You could see if an attribute has been set on the genotype node indicating the order: ``` > library(gdsfmt) > gdsfile <- system.file("extda…

Votes

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R

C: Can't install TopmedPipeline Package

Comment: Question about GWASTools gdsSubset

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k