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Comment: Comment: GSEA preranked analysis downstream of DEseq2
20 months ago hermidalc ▴ 20
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11k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
20 months ago hermidalc ▴ 20
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
0
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1.6k
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Answer: A: Application of RUV to a small Nanostring dataset
4.0 years ago hermidalc ▴ 20
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1
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8.5k
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Comment: C: Can NanoString data be analyzed using DESeq2?
4.0 years ago hermidalc ▴ 20
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1.9k
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Comment: C: Why NanoStringDiff package so slow?
4.0 years ago hermidalc ▴ 20
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1.9k
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Comment: C: Why NanoStringDiff package so slow?
4.0 years ago hermidalc ▴ 20
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12k
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Comment: C: Nanostring analysis with limma
4.0 years ago hermidalc ▴ 20
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1
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12k
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Comment: C: Nanostring analysis with limma
4.0 years ago hermidalc ▴ 20
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12k
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Comment: C: Nanostring analysis with limma
4.0 years ago hermidalc ▴ 20
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2.7k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
4.5 years ago hermidalc ▴ 20
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2.2k
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Comment: C: Multiple samples per individual and unbalanced number of samples per individual:
4.5 years ago hermidalc ▴ 20
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4.6k
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Comment: C: Further clarification on when not to use duplicateCorrelation with technical rep
4.5 years ago hermidalc ▴ 20
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1
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2.2k
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Comment: C: Multiple samples per individual and unbalanced number of samples per individual:
4.5 years ago hermidalc ▴ 20
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2.3k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
4.5 years ago hermidalc ▴ 20
8
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11
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2.3k
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 4.5 years ago by 50k • written 4.5 years ago by ▴ 20
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17k
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Comment: C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
4.5 years ago hermidalc ▴ 20
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2
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17k
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Comment: C: difference among tximport scaledTPM, lengthScaledTPM and the original TPM output
4.5 years ago hermidalc ▴ 20
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2.3k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
4.5 years ago hermidalc ▴ 20
0
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0
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2.3k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
4.5 years ago hermidalc ▴ 20
0
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2
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2.3k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
4.5 years ago hermidalc ▴ 20
0
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1
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2.2k
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Comment: C: Multiple samples per individual and different number of samples per individual:
4.5 years ago hermidalc ▴ 20
1
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1
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2.3k
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Comment: C: dream vignette says limma-voom repeated measures two-group comparison needs two
4.5 years ago hermidalc ▴ 20
3
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6
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2.2k
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Repeated measures per individual and unbalanced number of measures per individual: DE between groups still an ordinary two-group comparison?
differentialexpression deseq2 limma edger repeatedmeasures
4.5 years ago • updated 2.2 years ago hermidalc ▴ 20
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