Bioconductor VariancePartition

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DESeq2 variancePartition

9 weeks ago • updated 5 weeks ago Weiqian ▴ 10

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253

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RNAseq variancePartition edgeR dream

11 weeks ago DH • 0

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314

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variancePa variancePartition limma-voom dream

updated 3 months ago by Gordon Smyth 47k • written 3 months ago by Le • 0

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203

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expression variancePartition edgeR

9 months ago Jonathan • 0

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edgeR limma variancePartition

updated 22 months ago by Gordon Smyth 47k • written 22 months ago by jackgisby • 0

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833

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limma variancePartition

updated 23 months ago by Gordon Smyth 47k • written 23 months ago by jarod ▴ 20

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489

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variancePartition limma

2.1 years ago Junghoon ▴ 10

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776

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variancePartition limma BiocParallel

2.1 years ago Junghoon ▴ 10

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703

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BiocParallel limma variancePartition

2.1 years ago • updated 23 months ago Junghoon ▴ 10

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1.5k

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dream variancePartition limma differential expression repeated measures

updated 3.6 years ago by Gordon Smyth 47k • written 3.7 years ago by hermidalc ▴ 20

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958

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variancepartition lme4 mixedmodel

updated 3.7 years ago by gabriel.hoffman ▴ 90 • written 3.8 years ago by c.taylor • 0

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1.2k

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limma voom variancePartition dream

updated 3.7 years ago by gabriel.hoffman ▴ 90 • written 3.9 years ago by Ben ▴ 50

12 results • Page 1 of 1

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Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.8k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k

lfa and gcatest have been reinstated.

Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710

How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…

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Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

A: Generating a proper TxDb instance from NCBI GFF Annotations File

A: VariantAnnotation non-model species

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