Showing : repeated measures • reset
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Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2 rnaseq repeated measures time series design formula
updated 3.7 years ago by 40k • written 3.7 years ago by ▴ 10
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4
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439
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DESeq2 for repeated/clustered samples
deseq2 repeated measures
updated 3.8 years ago by 40k • written 3.8 years ago by • 0
8
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11
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1.9k
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dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 4.0 years ago by 48k • written 4.0 years ago by ▴ 20
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5
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1.1k
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SVA for repeated measures design
SVA deseq2 repeated measures
updated 4.0 years ago by ★ 3.0k • written 4.0 years ago by • 0
6
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5
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1.7k
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Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma rna-seq mixed model repeated measures
updated 5.0 years ago by 48k • written 5.0 years ago by ▴ 270
3
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2
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Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
edgeR rnaseq repeated measures
updated 5.5 years ago by 7.8k • written 5.5 years ago by • 0
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DESeq2 - How to study time course experiment taking subject variability into account?
deseq2 repeated measures time course
updated 5.7 years ago by 40k • written 5.7 years ago by • 0
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LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
LIMMA FACTORIAL REPEATED MEASURES differential gene expression
8.1 years ago • updated 7.9 years ago robert.maughan • 0
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Model in metagenomeSeq
repeated measures
7.9 years ago PJ • 0
9 results • Page 1 of 1
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Comment: Suggested package missing from Development version of Bioconductor by shepherl 3.5k
Is your package in review or already in Bioconductor? Its harder if it is in review because we can't tell that the package has or can build…
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by andrew.b.kleist • 0
This worked perfectly! I was able to retrieve the sequences of interest using ```host="https://grch37.ensembl.org"``` within the useEnsembl…
Comment: Using edgeR and a spike-in to calculate absolute abundance by Miguel • 0
I have the same issue. As far as I understand, many of the approximations to compute differential abundances include normalization steps wh…
Comment: shinyMethyl - saving the file by dorota.komar • 0
ok, it seems that I can embed shinyMethyl as an app in Rmarkdown and it should allow me to keep an interactive character. No idea how to do…
Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gordon Smyth 48k
The splitOnly option is designed to strictly return split reads, i.e., reads that identify exon junctions rather than simply read-pairs ove…
Votes
Normalisation of data using DESeq2 with multi-groups
Answer: Normalisation of data using DESeq2 with multi-groups
Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
Batch correction and Deseq2
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