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0
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2
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219
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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
18 days ago • updated 6 days ago
shepherl
3.8k
0
votes
0
replies
84
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
13 days ago
shepherl
3.8k
5
votes
1
reply
375
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 4 months ago by
shepherl
3.8k
2
votes
1
reply
857
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq
microbiome
Software
updated 6 months ago by
ATpoint
★ 3.9k • written 6 months ago by
HULFRED
▴ 10
0
votes
0
replies
342
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
6 months ago
shepherl
3.8k
0
votes
1
reply
374
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Franck RICHARD
• 0
1
vote
8
replies
1.4k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.0 years ago by
shepherl
3.8k
0
votes
0
replies
522
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
10 months ago
shepherl
3.8k
0
votes
0
replies
510
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
12 months ago
shepherl
3.8k
3
votes
6
replies
1.1k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 12 months ago by
darrelvanhoy
• 0 • written 12 months ago by
shepherl
3.8k
0
votes
0
replies
707
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
16 months ago
Robert Castelo
★ 3.1k
1
vote
0
replies
747
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
16 months ago
shepherl
3.8k
0
votes
0
replies
662
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
17 months ago
shepherl
3.8k
8
votes
0
replies
794
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
23 months ago • updated 22 months ago
shepherl
3.8k
0
votes
0
replies
575
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
23 months ago
shepherl
3.8k
0
votes
5
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.4 years ago • updated 23 months ago
shepherl
3.8k
8
votes
0
replies
850
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.4 years ago
shepherl
3.8k
0
votes
0
replies
819
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
2.5 years ago
Daniel
• 0
5
votes
0
replies
988
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.8 years ago
shepherl
3.8k
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.3 years ago • updated 2.9 years ago
shepherl
3.8k
4
votes
0
replies
889
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.4 years ago
shepherl
3.8k
1
vote
2
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.4 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
3.4 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
4
replies
1.1k
views
Bioconductor package development
package
R
software
development
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Dany
• 0
3
votes
0
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
3.5 years ago
shepherl
3.8k
0
votes
2
replies
740
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 3.6 years ago by
shepherl
3.8k • written 3.6 years ago by
gnanaprakash.s
• 0
0
votes
0
replies
780
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
3.8 years ago
shepherl
3.8k
0
votes
2
replies
770
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
AmalAbdel-Aziz
• 0
0
votes
3
replies
974
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 3.9 years ago by
kayla.interdonato
▴ 160 • written 4.0 years ago by
shepherl
3.8k
4
votes
0
replies
771
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
3.9 years ago
shepherl
3.8k
0
votes
0
replies
730
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.1 years ago
shepherl
3.8k
0
votes
1
reply
815
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.2 years ago
shepherl
3.8k
1
vote
1
reply
1.0k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 4.3 years ago by
anamaria
▴ 10 • written 4.3 years ago by
jol.espinoz
▴ 40
0
votes
0
replies
837
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.3 years ago
shepherl
3.8k
0
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.4 years ago • updated 4.3 years ago
shepherl
3.8k
2
votes
2
replies
974
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.4 years ago
shepherl
3.8k
6
votes
0
replies
811
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.4 years ago
shepherl
3.8k
0
votes
0
replies
808
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.5 years ago
shepherl
3.8k
2
votes
0
replies
2.3k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
4.5 years ago
Laurent Gatto
1.6k
0
votes
1
reply
991
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.6 years ago • updated 4.5 years ago
shepherl
3.8k
0
votes
0
replies
716
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
4.8 years ago
jmaanaki
• 0
0
votes
3
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.8 years ago
shepherl
3.8k
0
votes
1
reply
823
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
4.9 years ago • updated 4.8 years ago
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.1 years ago
shepherl
3.8k
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
Jamal
• 0
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
5.2 years ago
shepherl
3.8k
0
votes
0
replies
1.0k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
5.9 years ago
shepherl
3.8k
0
votes
8
replies
2.1k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
mousheng xu
▴ 10
1
vote
3
replies
1.5k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
MarcinKosiński
• 0
2
votes
3
replies
2.7k
views
package for sex determination using sam/bam files
software
sex
package
8.4 years ago
Pau Marc Muñoz Torres
▴ 20
50 results • Page
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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