Showing : Software • reset
5
votes
0
replies
130
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
9 weeks ago • updated 8 weeks ago shepherl 2.8k
2
votes
2
replies
429
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News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
7 months ago • updated 11 weeks ago shepherl 2.8k
4
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0
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145
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News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
9 months ago shepherl 2.8k
1
vote
2
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399
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
9 months ago shepherl 2.8k
0
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0
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465
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Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
9 months ago Vincent J. Carey, Jr. 6.5k
2
votes
4
replies
257
views
Bioconductor package development
package R software development
updated 9 months ago by 25k • written 9 months ago by • 0
3
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0
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593
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News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
10 months ago shepherl 2.8k
0
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2
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169
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What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 11 months ago by 2.8k • written 11 months ago by • 0
0
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0
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130
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News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
13 months ago shepherl 2.8k
0
votes
2
replies
123
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 14 months ago by 57k • written 14 months ago by • 0
0
votes
3
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241
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 15 months ago by 120 • written 16 months ago by 2.8k
4
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0
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161
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
15 months ago shepherl 2.8k
0
votes
0
replies
141
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
17 months ago shepherl 2.8k
0
votes
1
reply
185
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
18 months ago shepherl 2.8k
1
vote
1
reply
253
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 19 months ago by ▴ 10 • written 20 months ago by ▴ 40
0
votes
0
replies
197
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
20 months ago shepherl 2.8k
0
votes
2
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310
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
21 months ago • updated 20 months ago shepherl 2.8k
2
votes
2
replies
231
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
20 months ago shepherl 2.8k
6
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0
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252
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News: Bioconductor 3.10 is released!!
release software packages bioconductor News
21 months ago shepherl 2.8k
0
votes
0
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256
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
22 months ago shepherl 2.8k
2
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0
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1.6k
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
22 months ago Laurent Gatto 1.5k
0
votes
1
reply
349
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
24 months ago • updated 23 months ago shepherl 2.8k
1
vote
5
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479
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
2.3 years ago • updated 2.0 years ago shepherl 2.8k
0
votes
0
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243
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
2.1 years ago jmaanaki • 0
0
votes
3
replies
354
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
2.1 years ago shepherl 2.8k
0
votes
1
reply
279
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
2.2 years ago shepherl 2.8k
0
votes
1
reply
443
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
2.4 years ago shepherl 2.8k
0
votes
1
reply
503
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 2.5 years ago by 57k • written 2.5 years ago by • 0
0
votes
1
reply
404
views
News: List of Deprecated Package Bioc 3.9
deprecate release software devel News
2.6 years ago shepherl 2.8k
0
votes
0
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470
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News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
3.3 years ago shepherl 2.8k
0
votes
8
replies
1.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 5.1 years ago by ★ 4.3k • written 5.2 years ago by ▴ 10
1
vote
3
replies
844
views
Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 5.7 years ago by ★ 8.2k • written 5.7 years ago by • 0
2
votes
3
replies
1.6k
views
package for sex determination using sam/bam files
software sex package
5.8 years ago Pau Marc Muñoz Torres ▴ 20
0
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0
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1.3k
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Job: Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software engineer bioinformatician job Job
6.7 years ago Doe, Aimee ▴ 40
0
votes
0
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904
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News: The NIH Software Discovery Index | We invite your comments
software NIH index News
6.8 years ago Sean Davis 21k
35 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350
Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k
> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k
The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k
Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780
Dear James, thank you very much for your comment; please excuse me for my naïve additional question, but is there an example in the edgeR …
Votes
tximeta error in fetching genome info
Answer: error in getBM (biomaRt): "error: no such table: metadata"
C: DESeq2 design formula: single control for multiple conditions [RIP-seq]
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Answer: cannot install edgeR on M1 Mac
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