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130
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Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
10 weeks ago
Robert Castelo
★ 3.0k
1
vote
0
replies
144
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
3 months ago
shepherl
3.4k
0
votes
0
replies
199
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
4 months ago
shepherl
3.4k
8
votes
0
replies
313
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
9 months ago
shepherl
3.4k
0
votes
0
replies
240
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
10 months ago
shepherl
3.4k
0
votes
5
replies
669
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
15 months ago • updated 9 months ago
shepherl
3.4k
8
votes
0
replies
427
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
15 months ago
shepherl
3.4k
0
votes
0
replies
430
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
17 months ago
Daniel
• 0
5
votes
0
replies
542
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
20 months ago
shepherl
3.4k
2
votes
2
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
2.2 years ago • updated 21 months ago
shepherl
3.4k
4
votes
0
replies
466
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
2.3 years ago
shepherl
3.4k
1
vote
2
replies
883
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
2.3 years ago
shepherl
3.4k
0
votes
0
replies
710
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
2.3 years ago
Vincent J. Carey, Jr.
6.6k
2
votes
4
replies
701
views
Bioconductor package development
package
R
software
development
updated 2.3 years ago by
Martin Morgan
25k • written 2.3 years ago by
Dany
• 0
3
votes
0
replies
978
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
2.4 years ago • updated 2.3 years ago
shepherl
3.4k
0
votes
2
replies
414
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 2.5 years ago by
shepherl
3.4k • written 2.5 years ago by
gnanaprakash.s
• 0
0
votes
0
replies
399
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
2.7 years ago
shepherl
3.4k
0
votes
2
replies
414
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 2.7 years ago by
James W. MacDonald
62k • written 2.7 years ago by
AmalAbdel-Aziz
• 0
0
votes
3
replies
558
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 2.8 years ago by
kayla.interdonato
140 • written 2.8 years ago by
shepherl
3.4k
4
votes
0
replies
430
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
2.8 years ago
shepherl
3.4k
0
votes
0
replies
380
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
2.9 years ago
shepherl
3.4k
0
votes
1
reply
448
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
3.1 years ago
shepherl
3.4k
1
vote
1
reply
572
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 3.2 years ago by
anamaria
▴ 10 • written 3.2 years ago by
jol.espinoz
▴ 40
0
votes
0
replies
459
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
3.2 years ago
shepherl
3.4k
0
votes
2
replies
835
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
3.3 years ago • updated 3.2 years ago
shepherl
3.4k
2
votes
2
replies
561
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
3.2 years ago
shepherl
3.4k
6
votes
0
replies
492
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
3.3 years ago
shepherl
3.4k
0
votes
0
replies
485
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
3.4 years ago • updated 3.3 years ago
shepherl
3.4k
2
votes
0
replies
1.9k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
3.4 years ago
Laurent Gatto
1.6k
0
votes
1
reply
611
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
3.5 years ago • updated 3.4 years ago
shepherl
3.4k
1
vote
5
replies
789
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
3.9 years ago • updated 3.6 years ago
shepherl
3.4k
0
votes
0
replies
458
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
3.6 years ago
jmaanaki
• 0
0
votes
3
replies
604
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
3.7 years ago
shepherl
3.4k
0
votes
1
reply
479
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
3.7 years ago
shepherl
3.4k
0
votes
1
reply
756
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
4.0 years ago
shepherl
3.4k
0
votes
1
reply
780
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 4.1 years ago by
James W. MacDonald
62k • written 4.1 years ago by
Jamal
• 0
0
votes
1
reply
620
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
4.1 years ago
shepherl
3.4k
0
votes
0
replies
693
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
4.8 years ago
shepherl
3.4k
0
votes
8
replies
1.5k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 6.6 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
mousheng xu
▴ 10
1
vote
3
replies
1.2k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 7.2 years ago by
Dan Tenenbaum
★ 8.2k • written 7.2 years ago by
MarcinKosiński
• 0
2
votes
3
replies
2.2k
views
package for sex determination using sam/bam files
software
sex
package
7.3 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
0
replies
1.5k
views
Job:
Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software
engineer
bioinformatician job
Job
8.2 years ago
Doe, Aimee
▴ 40
0
votes
0
replies
1.1k
views
News:
The NIH Software Discovery Index | We invite your comments
software
NIH
index
News
8.3 years ago
Sean Davis
21k
43 results • Page
1 of 1
Recent ...
Replies
Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
Awards
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Popular Question
to
Ryan
• 0
Popular Question
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Guido Hooiveld
★ 3.5k
Scholar
to
James W. MacDonald
62k
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to
Michael Love
39k
Popular Question
to
twtoal
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