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basilisk

updated 6 months ago by ATpoint ★ 4.8k • written 6 months ago by Stefano Mangiola ▴ 40

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basilisk spatialDE

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by Robert Castelo ★ 3.4k

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Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k

Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…

Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Comment: parameters of filterByExpr

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