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Comment: Comment: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
22 months ago Robert Castelo ★ 3.3k
2
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1
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1.2k
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Answer: Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
22 months ago Robert Castelo ★ 3.3k
1
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1
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2.1k
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Comment: Comment: Why Negative value from GSVA
22 months ago Robert Castelo ★ 3.3k
2
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1
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2.1k
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Answer: Answer: Why Negative value from GSVA
22 months ago Robert Castelo ★ 3.3k
0
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1
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1.9k
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Answer: Answer: Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
22 months ago Robert Castelo ★ 3.3k
0
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0
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894
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Answer: Answer: GC content
22 months ago Robert Castelo ★ 3.3k
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0
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2.3k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
22 months ago Robert Castelo ★ 3.3k
0
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1
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2.3k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
23 months ago Robert Castelo ★ 3.3k
1
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1
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1.1k
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Answer: Answer: Can GSVA be applied in several sample type and each type only have two replicate
23 months ago Robert Castelo ★ 3.3k
2
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1
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1.4k
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Answer: Answer: How to run GSVA with partially NA genes
23 months ago Robert Castelo ★ 3.3k
0
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2
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2.3k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.0 years ago Robert Castelo ★ 3.3k
0
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0
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2.9k
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Comment: Comment: Unassigned reads in Rsubread FeatureCounts
2.0 years ago Robert Castelo ★ 3.3k
2
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0
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1.1k
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Answer: Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
2.0 years ago Robert Castelo ★ 3.3k
1
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0
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1.2k
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Answer: Answer: org.Hs.eg.db，Error: could not find function ".libPath"
2.1 years ago Robert Castelo ★ 3.3k
1
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1
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2.3k
views
Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.1 years ago Robert Castelo ★ 3.3k
1
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0
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5.4k
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Comment: Comment: GSVA and ssGSEA output differences
2.1 years ago Robert Castelo ★ 3.3k
0
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1
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5.4k
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Answer: Answer: GSVA and ssGSEA output differences
2.1 years ago Robert Castelo ★ 3.3k
0
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2
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2.3k
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Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.1 years ago Robert Castelo ★ 3.3k
0
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1
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2.3k
views
Comment: Comment: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.1 years ago Robert Castelo ★ 3.3k
2
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1
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2.3k
views
Answer: Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.1 years ago Robert Castelo ★ 3.3k
1
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0
replies
1.2k
views
Answer: Answer: Cleaning GeneSets from GSEA
2.1 years ago Robert Castelo ★ 3.3k
0
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0
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1.1k
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Answer: Answer: GSEA using custom GO annotations
2.1 years ago Robert Castelo ★ 3.3k
0
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0
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790
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Answer: Answer: Running PLAGE gets killed
2.1 years ago Robert Castelo ★ 3.3k
0
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0
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1.2k
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Answer: Answer: GSVA: for a pathway, can enrichment scores of all samples be negative?
2.2 years ago Robert Castelo ★ 3.3k
0
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0
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764
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
2.3 years ago Robert Castelo ★ 3.3k
0
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0
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1.2k
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Answer: Answer: GSVA package normalization on gene-length ?
2.4 years ago Robert Castelo ★ 3.3k
1
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0
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1.1k
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Comment: Comment: How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
2.4 years ago Robert Castelo ★ 3.3k
0
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1
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1.6k
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Answer: Answer: GOstats - are significantly enriched GO terms with a small "size" meaningful?
2.5 years ago Robert Castelo ★ 3.3k
0
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0
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1.5k
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Comment: Comment: GenomicScores package: availableGScores and getGScores functions not working
2.6 years ago Robert Castelo ★ 3.3k
0
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1
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1.5k
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Comment: Comment: GenomicScores package: availableGScores and getGScores functions not working
2.6 years ago Robert Castelo ★ 3.3k
0
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2
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1.5k
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Answer: Answer: GenomicScores package: availableGScores and getGScores functions not working
2.6 years ago Robert Castelo ★ 3.3k
2
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1
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2.0k
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Answer: Answer: Questions regard to GSVA and Limma
2.8 years ago Robert Castelo ★ 3.3k
2
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1
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841
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Answer: Answer: Turn of GSVA filtering for method ssGSEA
2.8 years ago Robert Castelo ★ 3.3k
1
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2
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1.8k
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Answer: Answer: Issue with GSVA using dgCMatrix
2.9 years ago Robert Castelo ★ 3.3k
0
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0
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3.0k
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Answer: Answer: GSVA Problem
3.0 years ago Robert Castelo ★ 3.3k
0
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1
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2.2k
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Comment: Comment: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
3.1 years ago Robert Castelo ★ 3.3k
2
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1
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2.2k
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Answer: Answer: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
3.1 years ago Robert Castelo ★ 3.3k
0
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1
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2.7k
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Comment: Comment: Error in .local(expr, gset.idx.list, ...) : Please install the nnotation pack
3.1 years ago Robert Castelo ★ 3.3k
0
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0
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957
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
3.2 years ago Robert Castelo ★ 3.3k
0
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0
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1.3k
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Answer: Answer: How to set mod0 in sva analysis
3.2 years ago Robert Castelo ★ 3.3k
2
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1
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1.8k
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Comment: Comment: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
3.2 years ago Robert Castelo ★ 3.3k
0
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2
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5.6k
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Comment: Comment: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
3.2 years ago Robert Castelo ★ 3.3k
3
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1
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1.8k
views
Answer: Answer: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
3.2 years ago Robert Castelo ★ 3.3k
0
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1
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5.6k
views
Answer: Answer: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
3.2 years ago Robert Castelo ★ 3.3k
0
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0
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1.8k
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Comment: Comment: Selecting or not selecting samples before running GSVA
3.4 years ago Robert Castelo ★ 3.3k
1
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1
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1.8k
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Answer: Answer: Selecting or not selecting samples before running GSVA
3.4 years ago Robert Castelo ★ 3.3k
0
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0
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1.4k
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Comment: Comment: GSVA on gene sets with 2 genes
3.5 years ago Robert Castelo ★ 3.3k
0
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1
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1.4k
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Answer: A: GSVA on gene sets with 2 genes
3.6 years ago Robert Castelo ★ 3.3k
0
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0
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1.6k
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Comment: C: Error in GSVA: Error in dimnames(x) <- dn
3.6 years ago Robert Castelo ★ 3.3k
0
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1
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1.6k
views
Comment: C: Error in GSVA: Error in dimnames(x) <- dn
3.6 years ago Robert Castelo ★ 3.3k
444 results • Page 2 of 9
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