Showing : sequencing • reset
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
1 day ago Robert Castelo ★ 2.8k
6
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6
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296
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Batch effect from to sequencing data at differents depths
Sequencing sequencingDeepth BatchEffect DESeq2
3 months ago ary.lech ▴ 10
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156
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Job: Bioinformatician position at University of Texas Southwestern Medical Center
Sequencing bioinformatics
3 months ago chao.xing • 0
1
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3
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299
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Preferential sequencing of longer Genes in Illumina?
DESeq2 sequencing
updated 10 months ago by • 0 • written 10 months ago by • 0
2
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2
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274
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is the P value reliable if the counts are Low across the sample ?
DESeq2 sequencing
10 months ago simplyphage • 0
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308
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
11 months ago Robert Castelo ★ 2.8k
0
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357
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Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
12 months ago • updated 11 months ago lhd • 0
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297
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
12 months ago António Miguel de Jesus Domingues ▴ 480
0
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0
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291
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Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
22 months ago jiyeon.choi2 • 0
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0
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309
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Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
2.4 years ago jmaanaki • 0
0
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2
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454
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DESeq2 error on analyzing microbiome data
deseq2 microbiome sequencing
2.6 years ago • updated 2.5 years ago zhigang.li • 0
2
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3
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573
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Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 2.6 years ago by ★ 3.3k • written 2.7 years ago by ▴ 50
0
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1
reply
368
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Annotating protein sequences
Protein iranges sequencing
2.9 years ago ieuangw • 0
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0
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1.1k
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Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
3.3 years ago hschmidt • 0
0
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0
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498
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Job: Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer bioinformatics bioinformatician job sequencing Job
3.4 years ago gabriel.wajnberg • 0
1
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10
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1.2k
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Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2 sequencing ribosome profiling riboseq multiple factor design
updated 3.5 years ago by 35k • written 3.5 years ago by ▴ 10
0
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0
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590
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
3.6 years ago Andy Lynch ▴ 100
0
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0
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369
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Number of reads needed for Guide-Seq
sequencing
3.7 years ago Jacques-P.Tremblay • 0
0
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1
reply
1.1k
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Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 3.8 years ago by 58k • written 3.8 years ago by • 0
0
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0
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471
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Sequence composition effect
sequencing rnaseq_analysis
4.0 years ago alemutak • 0
0
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1
reply
728
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write ab1 files
sangerseqr sequencing abi
4.4 years ago tmolosh • 0
2
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11
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1.1k
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DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 10
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0
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1.2k
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
5.4 years ago dtlabmskcc • 0
3
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8
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3.0k
views
DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing DESeq Sequencing DESeq
updated 5.4 years ago by • 0 • written 8.1 years ago by ★ 12k
0
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7
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1.3k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 5.4 years ago by • 0 • written 11.8 years ago by 1.6k
8
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2
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2.2k
views
Appropriate ways to filter counts data for voom/limma
limma edger sequencing
updated 5.5 years ago by 44k • written 5.5 years ago by ▴ 10
6
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4
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752
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How to normalize chemical genomics barcode sequencing data
limma normalization sequencing edger
updated 5.6 years ago by ★ 27k • written 5.6 years ago by ▴ 20
0
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4
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1.7k
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DNAString: Standard checksum function?
Biostrings FASTA sequencing
5.9 years ago Henrik Bengtsson ★ 2.4k
2
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4
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953
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Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 5.9 years ago by ★ 27k • written 5.9 years ago by • 0
0
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5
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1.3k
views
getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 5.9 years ago by ▴ 20 • written 6.0 years ago by • 0
0
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4
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1.0k
views
IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
updated 6.1 years ago by ★ 5.4k • written 6.2 years ago by • 0
1
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0
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1.2k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
6.2 years ago Yassen Assenov ▴ 10
1
vote
1
reply
1.8k
views
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 10
1
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2
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1.4k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 6.3 years ago by ▴ 20 • written 6.3 years ago by • 0
1
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2
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790
views
Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer sequencing reference genome
6.4 years ago Stephanie M. Gogarten ▴ 820
1
vote
1
reply
1.7k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 6.5 years ago by 13k • written 6.5 years ago by ▴ 390
3
votes
0
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1.1k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
6.6 years ago • updated 6.5 years ago Matthew Ritchie ▴ 1000
0
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2
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1.1k
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preparing sequencing data for use with anota
Sequencing Normalization PROcess anota Sequencing Normalization PROcess anota
updated 6.5 years ago by • 0 • written 7.9 years ago by ★ 12k
3
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1
reply
1.6k
views
Adjusting for gender using limma
limma microarray sequencing
updated 6.5 years ago by 58k • written 6.5 years ago by ▴ 390
0
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1
reply
990
views
Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
updated 6.5 years ago by 15k • written 6.5 years ago by • 0
3
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4
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2.3k
views
Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 390
0
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2
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2.7k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 6.5 years ago by • 0 • written 8.8 years ago by ★ 8.2k
4
votes
2
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1.6k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 6.6 years ago by ★ 27k • written 6.6 years ago by ▴ 40
2
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3
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1.1k
views
SVA batch effects for different technologies
normalization deseq2 sequencing sva
6.6 years ago marcin.bazyliszek • 0
4
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0
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1.0k
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
6.6 years ago Matthew Ritchie ▴ 1000
2
votes
4
replies
4.9k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing Alignment DESeq DESeq2 Sequencing Alignment DESeq DESeq2
updated 6.7 years ago by • 0 • written 7.7 years ago by ★ 12k
0
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0
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1.2k
views
Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
6.7 years ago Harpreet Saini ▴ 30
1
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0
replies
891
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
6.8 years ago Merienne Nicolas ▴ 120
0
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0
replies
632
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Invitation Research Collaborations
cancer microarray mirna sequencing
6.8 years ago alexandru.floares • 0
0
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0
replies
1.2k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
7.0 years ago Andy Lynch ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
You can have as many columns as you like in coldata, only those specified in the design will be used when you do the DESeq command So sur…
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Matthew • 0
Thanks for the suggestion, I'll give that a try! Based on the PCA, all three factors do tend to influence the results, so I'll try the colu…
Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Votes
Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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