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Showing :
sequencing
•
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0
votes
0
replies
313
views
News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
8 months ago
communication
• 0
0
votes
0
replies
527
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
14 months ago
Sara
• 0
2
votes
5
replies
1.9k
views
Merge GRanges, ignore strand
Sequencing
SummarizedExperiment
GRanges
2.3 years ago
Marcus
• 0
0
votes
1
reply
1.5k
views
dispersion in edgeR
Sequencing
edgeR
Sequencing
edgeR
updated 2.5 years ago by
Gordon Smyth
52k • written 14.5 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
943
views
Job:
Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics
genomics
proteomics
biologicalchemistry
sequencing
2.9 years ago
Robert Castelo
★ 3.4k
6
votes
6
replies
1.9k
views
Batch effect from to sequencing data at differents depths
Sequencing
sequencingDeepth
BatchEffect
DESeq2
3.1 years ago
ary.lech
▴ 10
0
votes
0
replies
1.2k
views
Job:
Bioinformatician position at University of Texas Southwestern Medical Center
Sequencing
bioinformatics
3.1 years ago
chao.xing
• 0
1
vote
3
replies
1.0k
views
Preferential sequencing of longer Genes in Illumina?
DESeq2
sequencing
updated 3.7 years ago by
victorbradford4
• 0 • written 3.7 years ago by
simplyphage
• 0
2
votes
2
replies
1.0k
views
is the P value reliable if the counts are Low across the sample ?
DESeq2
sequencing
3.7 years ago
simplyphage
• 0
0
votes
0
replies
1.1k
views
Job:
Tenure-track Group Leader Position in Computational Biology
bioinformatics
sequencing
barcelona
proteomics
3.8 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.4k
views
Job:
Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting
postdoc
sequencing
multiomics
3.9 years ago • updated 3.8 years ago
lhd
• 0
0
votes
0
replies
1.1k
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
3.9 years ago
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
1.1k
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.7 years ago
jiyeon.choi2
• 0
0
votes
0
replies
1.1k
views
Job:
Post-doc fellow - Aparicio Lab
single cell
bioinformatics
genome
sequencing
Job
5.2 years ago
jmaanaki
• 0
0
votes
2
replies
1.5k
views
DESeq2 error on analyzing microbiome data
deseq2
microbiome
sequencing
5.4 years ago
zhigang.li
• 0
2
votes
3
replies
1.8k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 5.5 years ago by
Wei Shi
★ 3.6k • written 5.5 years ago by
Raito92
▴ 60
0
votes
1
reply
980
views
Annotating protein sequences
Protein
iranges
sequencing
5.7 years ago
ieuangw
• 0
0
votes
0
replies
3.0k
views
Job:
Postdoc in Population Genomics - UC Davis
bioinformatics
evolution
sequencing
genome analysis
genomics
Job
6.2 years ago
hschmidt
• 0
0
votes
0
replies
1.2k
views
Job:
Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer
bioinformatics
bioinformatician job
sequencing
Job
6.3 years ago
gabriel.wajnberg
• 0
1
vote
10
replies
2.5k
views
Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2
sequencing
ribosome profiling
riboseq
multiple factor design
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
kotcha.m
▴ 10
0
votes
0
replies
1.3k
views
Job:
Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer
sequencing
rnaseq
methylation
smallrna
Job
6.5 years ago
Andy Lynch
▴ 120
0
votes
0
replies
971
views
Number of reads needed for Guide-Seq
sequencing
6.6 years ago
Jacques-P.Tremblay
• 0
1
vote
1
reply
3.4k
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R
sequencing
alignment
rsamtools
mapping
updated 6.6 years ago by
James W. MacDonald
67k • written 6.6 years ago by
nginet
▴ 10
0
votes
0
replies
1.1k
views
Sequence composition effect
sequencing
rnaseq_analysis
6.9 years ago
alemutak
• 0
0
votes
1
reply
2.2k
views
write ab1 files
sangerseqr
sequencing
abi
7.2 years ago
tmolosh
• 0
2
votes
11
replies
2.2k
views
DESeq2 polysome profiling analysis with 2 interaction terms
deseq2
sequencing
polysome profiling
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
erica
▴ 10
0
votes
0
replies
1.9k
views
Job:
Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer
sequencing
genetics
genomes
diagnostic
Job
8.3 years ago
dtlabmskcc
• 0
3
votes
8
replies
4.8k
views
DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing
DESeq
Sequencing
DESeq
updated 8.3 years ago by
contactbiostructure
• 0 • written 11.0 years ago by
Guest User
★ 13k
0
votes
7
replies
2.5k
views
Bioconductor 2.6 is released
Sequencing
Microarray
Visualization
Infrastructure
PROcess
beadarray
keggorthology
eisa
updated 8.3 years ago by
wangyizhusss
• 0 • written 14.7 years ago by
Patrick Aboyoun
★ 1.6k
8
votes
3
replies
4.2k
views
Appropriate ways to filter counts data for voom/limma
limma
edger
sequencing
written 8.3 years ago by
blofeld
▴ 10
6
votes
4
replies
1.7k
views
How to normalize chemical genomics barcode sequencing data
limma
normalization
sequencing
edger
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
Yury Bukhman
▴ 20
0
votes
5
replies
3.2k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.8 years ago • updated 7 months ago
Henrik Bengtsson
★ 2.4k
2
votes
4
replies
1.6k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
kmyers2
• 0
0
votes
5
replies
2.5k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.8 years ago by
m.van_iterson
▴ 20 • written 8.8 years ago by
roser.navarro
• 0
0
votes
4
replies
1.7k
views
IONiseR readFast5Summary Error
R
sequencing
preprocessing
bioconductor
updated 9.0 years ago by
Mike Smith
★ 6.6k • written 9.1 years ago by
mariandhore
• 0
1
vote
0
replies
1.9k
views
Job:
Post-doc Position in Epigenetic Bioinformatics
cancer
sequencing
epigenetics
computational biology
bioinformatics
Job
9.1 years ago
Yassen Assenov
▴ 10
1
vote
1
reply
2.6k
views
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing
biostrings
shortread
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
steven.everman
▴ 10
1
vote
2
replies
2.4k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing
snp
updated 9.2 years ago by
Jan Oosting
▴ 20 • written 9.2 years ago by
markus.riester
• 0
1
vote
2
replies
1.5k
views
Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer
sequencing
reference genome
9.3 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
2.3k
views
Perplexing results with Limma with RNA-seq data
sequencing
microarray
updated 9.3 years ago by
Steve Lianoglou
★ 13k • written 9.3 years ago by
chris86
▴ 420
3
votes
0
replies
1.9k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
9.5 years ago • updated 9.4 years ago
Matthew Ritchie
▴ 1000
0
votes
2
replies
1.9k
views
preparing sequencing data for use with anota
Sequencing
Normalization
PROcess
anota
Sequencing
Normalization
PROcess
anota
updated 9.4 years ago by
kesarwani.anil
• 0 • written 10.7 years ago by
Guest User
★ 13k
3
votes
1
reply
2.4k
views
Adjusting for gender using limma
limma
microarray
sequencing
updated 9.4 years ago by
James W. MacDonald
67k • written 9.4 years ago by
chris86
▴ 420
0
votes
1
reply
1.7k
views
Getting data on the out-of-frame transcripts
annotate
sequencing
genomicfeatures
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
janson.white
• 0
3
votes
4
replies
3.8k
views
Variance filtering prior to RNA-seq differential expression
sequencing
deseq
limma
updated 9.4 years ago by
Gordon Smyth
52k • written 9.4 years ago by
chris86
▴ 420
0
votes
2
replies
4.0k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 9.4 years ago by
marksteve952
• 0 • written 11.7 years ago by
Dan Tenenbaum
★ 8.2k
4
votes
2
replies
2.5k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger
limma
mirna
sequencing
updated 9.4 years ago by
Aaron Lun
★ 28k • written 9.4 years ago by
R
▴ 40
2
votes
3
replies
1.9k
views
SVA batch effects for different technologies
normalization
deseq2
sequencing
sva
9.5 years ago
marcin.bazyliszek
• 0
4
votes
0
replies
1.6k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
9.5 years ago
Matthew Ritchie
▴ 1000
2
votes
4
replies
7.4k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing
Alignment
DESeq
DESeq2
Sequencing
Alignment
DESeq
DESeq2
updated 9.5 years ago by
gaelgarcia
• 0 • written 10.5 years ago by
Guest User
★ 13k
50 results • Page
1 of 1
Recent ...
Replies
Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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