Showing : sequencing • reset
1
vote
3
replies
193
views
Preferential sequencing of longer Genes in Illumina?
DESeq2 sequencing
updated 4 months ago by • 0 • written 4 months ago by • 0
2
votes
2
replies
182
views
is the P value reliable if the counts are Low across the sample ?
DESeq2 sequencing
4 months ago simplyphage • 0
0
votes
0
replies
154
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
5 months ago Robert Castelo ★ 2.7k
0
votes
0
replies
150
views
Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
6 months ago • updated 5 months ago lhd • 0
0
votes
0
replies
153
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
6 months ago António Miguel de Jesus Domingues ▴ 480
0
votes
0
replies
185
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
15 months ago jiyeon.choi2 • 0
0
votes
0
replies
221
views
Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
22 months ago jmaanaki • 0
0
votes
2
replies
347
views
DESeq2 error on analyzing microbiome data
deseq2 microbiome sequencing
2.0 years ago zhigang.li • 0
2
votes
3
replies
404
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by ▴ 50
0
votes
1
reply
275
views
Annotating protein sequences
Protein iranges sequencing
2.4 years ago ieuangw • 0
0
votes
0
replies
801
views
Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
2.8 years ago hschmidt • 0
0
votes
0
replies
415
views
Job: Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer bioinformatics bioinformatician job sequencing Job
2.9 years ago gabriel.wajnberg • 0
1
vote
10
replies
870
views
Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2 sequencing ribosome profiling riboseq multiple factor design
updated 3.0 years ago by 33k • written 3.0 years ago by ▴ 10
0
votes
0
replies
503
views
Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
3.1 years ago Andy Lynch ▴ 100
0
votes
0
replies
315
views
Number of reads needed for Guide-Seq
sequencing
3.2 years ago Jacques-P.Tremblay • 0
0
votes
1
reply
839
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 3.3 years ago by 57k • written 3.3 years ago by • 0
0
votes
0
replies
411
views
Sequence composition effect
sequencing rnaseq_analysis
3.5 years ago alemutak • 0
0
votes
1
reply
624
views
write ab1 files
sangerseqr sequencing abi
3.8 years ago tmolosh • 0
2
votes
11
replies
968
views
DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
updated 4.1 years ago by 33k • written 4.1 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
4.9 years ago dtlabmskcc • 0
3
votes
8
replies
2.6k
views
DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing DESeq Sequencing DESeq
updated 4.9 years ago by • 0 • written 7.6 years ago by ★ 12k
0
votes
7
replies
1.2k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 4.9 years ago by • 0 • written 11.3 years ago by 1.6k
8
votes
2
replies
2.0k
views
Appropriate ways to filter counts data for voom/limma
limma edger sequencing
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 10
6
votes
4
replies
650
views
How to normalize chemical genomics barcode sequencing data
limma normalization sequencing edger
updated 5.1 years ago by ★ 27k • written 5.1 years ago by ▴ 20
0
votes
4
replies
1.5k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
5.4 years ago Henrik Bengtsson ★ 2.4k
2
votes
4
replies
859
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 5.4 years ago by ★ 27k • written 5.4 years ago by • 0
0
votes
5
replies
1.1k
views
getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 5.4 years ago by ▴ 20 • written 5.4 years ago by • 0
0
votes
4
replies
962
views
IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
updated 5.6 years ago by ★ 5.0k • written 5.7 years ago by • 0
1
vote
0
replies
1.1k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
5.7 years ago Yassen Assenov ▴ 10
1
vote
1
reply
1.6k
views
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 10
1
vote
2
replies
1.2k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 5.8 years ago by ▴ 20 • written 5.8 years ago by • 0
1
vote
2
replies
725
views
Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer sequencing reference genome
5.9 years ago Stephanie M. Gogarten ▴ 800
1
vote
1
reply
1.7k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 6.0 years ago by 13k • written 6.0 years ago by ▴ 390
3
votes
0
replies
1.0k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
6.1 years ago • updated 6.0 years ago Matthew Ritchie ▴ 990
0
votes
2
replies
1.1k
views
preparing sequencing data for use with anota
Sequencing Normalization PROcess anota Sequencing Normalization PROcess anota
updated 6.0 years ago by • 0 • written 7.3 years ago by ★ 12k
3
votes
1
reply
1.5k
views
Adjusting for gender using limma
limma microarray sequencing
updated 6.0 years ago by 57k • written 6.0 years ago by ▴ 390
0
votes
1
reply
928
views
Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
updated 6.0 years ago by 15k • written 6.0 years ago by • 0
3
votes
4
replies
2.1k
views
Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 390
0
votes
2
replies
2.5k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 6.0 years ago by • 0 • written 8.3 years ago by ★ 8.2k
4
votes
2
replies
1.4k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 6.0 years ago by ★ 27k • written 6.0 years ago by ▴ 40
2
votes
3
replies
1.0k
views
SVA batch effects for different technologies
normalization deseq2 sequencing sva
6.1 years ago marcin.bazyliszek • 0
4
votes
0
replies
968
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
6.1 years ago Matthew Ritchie ▴ 990
2
votes
4
replies
4.6k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing Alignment DESeq DESeq2 Sequencing Alignment DESeq DESeq2
updated 6.2 years ago by • 0 • written 7.2 years ago by ★ 12k
0
votes
0
replies
1.1k
views
Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
6.2 years ago Harpreet Saini ▴ 30
1
vote
0
replies
817
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
6.2 years ago Merienne Nicolas ▴ 120
0
votes
0
replies
566
views
Invitation Research Collaborations
cancer microarray mirna sequencing
6.3 years ago alexandru.floares • 0
0
votes
0
replies
1.1k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
6.5 years ago Andy Lynch ▴ 100
3
votes
3
replies
1.4k
views
Clarrification of ReadDNAStringSet
sequencing
6.5 years ago khouloud.madbouh • 0
6
votes
1
reply
2.3k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 6.5 years ago by ▴ 340 • written 7.6 years ago by ▴ 160
0
votes
0
replies
927
views
Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
6.8 years ago Andy Lynch ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: openPrimeR does not recognize external MELTING installation by matthias-doering • 0
openPrimeR requires and checks for `melting-batch` rather than `melting`. Could you verify whether that's in your PATH as well?
Answer: DESeq2 Shrinkage methods for scRNA-Seq by Michael Love 33k
> This was surprising, as I didn't expect a shrinkage method to turn any positive LFC into (small) negative values. Is this expected behavi…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780
Dear Gordon, thank you very much for your valuable comment-probably James suggestion is the only way to include all the samples with `voomL…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780
Dear James, thank you for your additional clarification for the intended use of `voomLmFit`; Just to summarize three final points based o…
Answer: Getting paralogus genes from biomart for mouse by Mike Smith ★ 5.0k
First let's address why you're seeing the error. The reason you're getting the `Timeout was reached` error is because BioMart has a limit…
Votes
Answer: DESeq2 Shrinkage methods for scRNA-Seq
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
tximeta error in fetching genome info
Answer: error in getBM (biomaRt): "error: no such table: metadata"
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Popular Question to Thomas Maurel ▴ 790
Scholar to James W. MacDonald 57k
Teacher to Guido Hooiveld ★ 3.0k
Scholar to Michael Love 33k
Popular Question to Sara • 0
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