Showing : sequencing • reset
1
vote
3
replies
120
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Preferential sequencing of longer Genes in Illumina?
DESeq2 sequencing
updated 18 days ago by • 0 • written 18 days ago by • 0
2
votes
2
replies
107
views
is the P value reliable if the counts are Low across the sample ?
DESeq2 sequencing
19 days ago simplyphage • 0
0
votes
0
replies
64
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
8 weeks ago Robert Castelo ★ 2.7k
0
votes
0
replies
87
views
Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
11 weeks ago • updated 7 weeks ago lhd • 0
0
votes
0
replies
83
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3 months ago António Miguel de Jesus Domingues ▴ 480
0
votes
0
replies
126
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
12 months ago jiyeon.choi2 • 0
0
votes
0
replies
174
views
Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
19 months ago jmaanaki • 0
0
votes
2
replies
292
views
DESeq2 error on analyzing microbiome data
deseq2 microbiome sequencing
21 months ago zhigang.li • 0
2
votes
3
replies
311
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 22 months ago by ★ 3.3k • written 22 months ago by ▴ 40
0
votes
1
reply
217
views
Annotating protein sequences
Protein iranges sequencing
2.1 years ago ieuangw • 0
0
votes
0
replies
538
views
Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
2.5 years ago hschmidt • 0
0
votes
0
replies
366
views
Job: Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer bioinformatics bioinformatician job sequencing Job
2.6 years ago gabriel.wajnberg • 0
0
votes
10
replies
723
views
Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2 sequencing ribosome profiling riboseq multiple factor design
updated 2.7 years ago by 32k • written 2.7 years ago by • 0
0
votes
0
replies
453
views
Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
2.8 years ago Andy Lynch ▴ 100
0
votes
0
replies
277
views
Number of reads needed for Guide-Seq
sequencing
3.0 years ago Jacques-P.Tremblay • 0
0
votes
1
reply
740
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 3.0 years ago by 56k • written 3.0 years ago by • 0
0
votes
0
replies
376
views
Sequence composition effect
sequencing rnaseq_analysis
3.2 years ago alemutak • 0
0
votes
1
reply
578
views
write ab1 files
sangerseqr sequencing abi
3.6 years ago tmolosh • 0
2
votes
11
replies
879
views
DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
updated 3.9 years ago by 32k • written 3.9 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
4.6 years ago dtlabmskcc • 0
3
votes
8
replies
2.4k
views
DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing DESeq Sequencing DESeq
updated 4.6 years ago by • 0 • written 7.3 years ago by ★ 12k
0
votes
7
replies
1.1k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 4.6 years ago by • 0 • written 11.0 years ago by 1.6k
8
votes
2
replies
1.9k
views
Appropriate ways to filter counts data for voom/limma
limma edger sequencing
updated 4.7 years ago by 42k • written 4.7 years ago by ▴ 10
6
votes
4
replies
593
views
How to normalize chemical genomics barcode sequencing data
limma normalization sequencing edger
updated 4.8 years ago by ★ 26k • written 4.8 years ago by ▴ 20
0
votes
4
replies
1.4k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
5.1 years ago Henrik Bengtsson ★ 2.4k
2
votes
4
replies
796
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 5.1 years ago by ★ 26k • written 5.1 years ago by • 0
0
votes
5
replies
1.0k
views
getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by • 0
0
votes
4
replies
917
views
IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
updated 5.3 years ago by ★ 4.9k • written 5.4 years ago by • 0
1
vote
0
replies
1.1k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
5.4 years ago Yassen Assenov ▴ 10
1
vote
1
reply
1.5k
views
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 10
1
vote
2
replies
1.2k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
1
vote
2
replies
679
views
Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer sequencing reference genome
5.6 years ago Stephanie M. Gogarten ▴ 800
1
vote
1
reply
1.6k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 5.7 years ago by 13k • written 5.7 years ago by ▴ 390
3
votes
0
replies
988
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
5.8 years ago • updated 5.7 years ago Matthew Ritchie ▴ 990
0
votes
2
replies
1.0k
views
preparing sequencing data for use with anota
Sequencing Normalization PROcess anota Sequencing Normalization PROcess anota
updated 5.7 years ago by • 0 • written 7.1 years ago by ★ 12k
3
votes
1
reply
1.4k
views
Adjusting for gender using limma
limma microarray sequencing
updated 5.7 years ago by 56k • written 5.7 years ago by ▴ 390
0
votes
1
reply
833
views
Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
updated 5.7 years ago by 14k • written 5.7 years ago by • 0
3
votes
4
replies
2.0k
views
Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
updated 5.7 years ago by 42k • written 5.7 years ago by ▴ 390
0
votes
2
replies
2.4k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 5.8 years ago by • 0 • written 8.0 years ago by ★ 8.2k
4
votes
2
replies
1.4k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 5.8 years ago by ★ 26k • written 5.8 years ago by ▴ 40
2
votes
3
replies
963
views
SVA batch effects for different technologies
normalization deseq2 sequencing sva
5.8 years ago marcin.bazyliszek • 0
4
votes
0
replies
913
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
5.8 years ago Matthew Ritchie ▴ 990
2
votes
4
replies
4.5k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing Alignment DESeq DESeq2 Sequencing Alignment DESeq DESeq2
updated 5.9 years ago by • 0 • written 6.9 years ago by ★ 12k
0
votes
0
replies
1.1k
views
Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
5.9 years ago Harpreet Saini ▴ 30
1
vote
0
replies
773
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
6.0 years ago Merienne Nicolas ▴ 120
0
votes
0
replies
521
views
Invitation Research Collaborations
cancer microarray mirna sequencing
6.0 years ago alexandru.floares • 0
0
votes
0
replies
1.1k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
6.2 years ago Andy Lynch ▴ 100
3
votes
3
replies
1.4k
views
Clarrification of ReadDNAStringSet
sequencing
6.2 years ago khouloud.madbouh • 0
6
votes
1
reply
2.2k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 6.3 years ago by ▴ 340 • written 7.3 years ago by ▴ 160
0
votes
0
replies
888
views
Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
6.5 years ago Andy Lynch ▴ 100
302 results • Page 1 of 7
Recent ...
Replies
Answer: DepMap copy number by Laurent Gatto 1.5k
Hi Danny - sorry for the delay in answering, I hadn't set `depmap` as a tag yet. Yes, that bug has been fixed in the devel version.
Answer: High fold change reported for comparison of samples with zero values in all samp by James W. MacDonald 56k
The universal recommendation is to remove all genes with consistently low (or all zero) expression values prior to doing any modeling. It i…
Comment: Sample quality weights for RNA-seq by Naomi Altman ★ 6.0k
Thanks Michael. I'll try that. (Limma folks, I'd still love to hear from you.)
Answer: Installation error if message implemented in .Rprofile by Mike Smith ★ 4.9k
A similar issue has been reported recently for rhdf5filters (https://github.com/grimbough/rhdf5filters/issues/11) and rhdf5 (https://github…
Comment: Couldn't load org.Hs.eg.db by Xulei Huo • 0
That does not work, i have tried it.
Votes
Answer: TargetsFile. Where it is?
Answer: TargetsFile. Where it is?
Comment: TargetsFile. Where it is?
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
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Scholar to James W. MacDonald 56k
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