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5
votes
6
replies
2.5k
views
Is mapId supposed to concatenate multiVals?
annotationdbi ensembldb
updated 6.9 years ago by ★ 2.0k • written 7.0 years ago by ★ 13k
3
votes
1
reply
2.6k
views
Gene level exploratory data analysis from tximport results
tximport edgeR DESeq2
updated 7.9 years ago by 41k • written 7.9 years ago by ★ 13k
3
votes
2
replies
1.4k
views
pairwiseAlignments coordinate mapping?
biostrings pairwisealignment
updated 7.9 years ago by 16k • written 7.9 years ago by ★ 13k
0
votes
5
replies
884
views
How do we get a longer list of "Recent ... [replies]"
meta
updated 9.3 years ago by 65k • written 9.3 years ago by ★ 13k
0
votes
2
replies
1.5k
views
RNA-Seq, generate batch-free count matrix
updated 9.7 years ago by 50k • written 9.7 years ago by ★ 13k
0
votes
0
replies
765
views
Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
11.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
921
views
Fwd: all human gene coordinates
Cancer Cancer
updated 11.4 years ago by ▴ 440 • written 11.4 years ago by ★ 13k
0
votes
0
replies
654
views
Fwd: DESeq plotting graphs.
Cancer DESeq Cancer DESeq
11.6 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
1.2k
views
Cleaning up after getSeq(BSgenome, GRanges)
Cancer Cancer
updated 11.8 years ago by 16k • written 11.8 years ago by ★ 13k
0
votes
0
replies
498
views
combining hgu133a and hgu133b
Cancer cdf Cancer cdf
12.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
744
views
DESeq error thrown during estimateDispersions w/ coxReid method
Cancer DEXSeq Cancer DEXSeq
12.0 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.6k
views
Some particulars about rtracklayer::liftOver
Cancer rtracklayer Cancer rtracklayer
updated 12.0 years ago by ★ 11k • written 12.0 years ago by ★ 13k
0
votes
2
replies
1.2k
views
Calculating alignment scores from aligned sequences
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 12.0 years ago by ★ 11k • written 12.0 years ago by ★ 13k
0
votes
3
replies
950
views
Parallelizing Biostrings::pairwiseAlignment locally with multicore::mclapply problems?
Cancer Cancer
12.0 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
683
views
Intersecting two chromosomal ranges but keeping the unique ones
Cancer Cancer
updated 12.1 years ago by ▴ 130 • written 12.1 years ago by ★ 13k
0
votes
5
replies
1.1k
views
A few Q's on using DEXSeq with mucho data
Cancer DEXSeq Cancer DEXSeq
updated 12.1 years ago by ★ 3.7k • written 12.1 years ago by ★ 13k
0
votes
7
replies
1.2k
views
GenomicFeatures::makeTranscriptDbFromGTF?
Cancer GenomicFeatures Cancer GenomicFeatures
updated 12.2 years ago by ★ 11k • written 12.2 years ago by ★ 13k
0
votes
0
replies
1.5k
views
installation of Rsamtools
GO Cancer Rsamtools GO Cancer Rsamtools
12.3 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
789
views
Fwd: extract introns
Cancer Organism BSgenome BSgenome Cancer Organism BSgenome BSgenome
12.5 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
1.7k
views
error in bioconductor installation
Cancer Cancer
updated 13.2 years ago by ▴ 20 • written 13.2 years ago by ★ 13k
0
votes
6
replies
703
views
[somehow-OT] Storing/quickly accessing "genome length" data.
GO Cancer cdf GO Cancer cdf
updated 13.2 years ago by ★ 11k • written 13.2 years ago by ★ 13k
0
votes
10
replies
1.2k
views
c()ombining G/IRanges with elementMetadata: feature inquiry/request
Cancer Cancer
updated 13.2 years ago by ★ 11k • written 13.2 years ago by ★ 13k
0
votes
2
replies
1.0k
views
Confused about IRanges::nearest, precede, follow functions/docs.
Cancer Cancer
updated 13.3 years ago by ★ 11k • written 13.3 years ago by ★ 13k
0
votes
3
replies
612
views
A story about IRanges::GappedRanges ... how does it end?
Cancer IRanges Cancer IRanges
updated 13.5 years ago by ★ 11k • written 13.5 years ago by ★ 13k
0
votes
3
replies
884
views
Combining two CompressedNormalIRangesList objects doesn't work
Cancer IRanges Cancer IRanges
13.5 years ago Steve Lianoglou ★ 13k
0
votes
4
replies
812
views
Bug in set operations over IRanges objects with non-NULL elementMetadata()
Cancer Cancer
13.5 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
543
views
Inconistent behavior with all/any and Rle
Cancer Cancer
updated 13.6 years ago by 25k • written 13.6 years ago by ★ 13k
0
votes
1
reply
514
views
Bug/typo in latest GenomicFeatures (rev 50109)
Cancer Cancer
updated 13.6 years ago by 25k • written 13.6 years ago by ★ 13k
0
votes
1
reply
841
views
Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Cancer Cancer
updated 13.6 years ago by 25k • written 13.6 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Flagging overlapping gene exons (was Re: Question about CSAMA10 ...)
Annotation Cancer IRanges GenomicFeatures GenomicRanges Annotation Cancer IRanges
13.6 years ago Steve Lianoglou ★ 13k
0
votes
4
replies
1.1k
views
GOstats::geneIdUniverse() and its relation to organism annotation db's
Annotation GO Cancer GOstats Annotation GO Cancer GOstats
updated 13.6 years ago by ▴ 280 • written 13.7 years ago by ★ 13k
0
votes
2
replies
799
views
Did the behavior of as.vector(Rle(some.factor)) change on purpose?
Cancer Cancer
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 13k
0
votes
6
replies
1.4k
views
Why is *ply-ing over a GRangesList much slower than *ply-ing over an IRangesList?
Cancer Cancer
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
0
votes
5
replies
1.3k
views
A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
13.7 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
1.8k
views
endoapply over GRangesList fails when an empty GRanges object is returned (Bug?)
Cancer Cancer
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
0
votes
6
replies
980
views
GenomicRanges:::.similarSeqnameConvention regular expressions needs some tweaking?
Cancer Cancer
13.7 years ago Steve Lianoglou ★ 13k
0
votes
4
replies
1.1k
views
Performing set ops with an IRanges object loaded with elementMetadata is like a shotgun, pointing at my foot.
Cancer IRanges Cancer IRanges
updated 13.8 years ago by ★ 11k • written 13.8 years ago by ★ 13k
0
votes
2
replies
899
views
Querying/manipulating JASPAR data
Transcription Cancer Transcription Cancer
updated 13.9 years ago by ★ 1.7k • written 13.9 years ago by ★ 13k
0
votes
0
replies
627
views
Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?) -- DISREGARD
Cancer Biostrings IRanges Cancer Biostrings IRanges
13.9 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
614
views
Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?)
Cancer Cancer
13.9 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.2k
views
is database RefSeq achievable from any Bioconductor package
Annotation Cancer biomaRt GenomicFeatures Annotation Cancer biomaRt GenomicFeatures
updated 13.9 years ago by ★ 6.5k • written 13.9 years ago by ★ 13k
0
votes
0
replies
687
views
LIMMA: data with technical replicate/familial relationship/biological replicate
Cancer limma Cancer limma
14.0 years ago Steve Lianoglou ★ 13k
0
votes
3
replies
1.4k
views
Bug (?) in IRanges::findOverlaps(self, ignoreSelf=TRUE, ignoreRedundat=TRUE)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.0 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
932
views
IRanges bug? Running do.cal("c", list.of.IRanges.objects)
Cancer IRanges Cancer IRanges
updated 14.0 years ago by ★ 1.6k • written 14.0 years ago by ★ 13k
0
votes
2
replies
996
views
Manipulating large DNAStringSet(s)
GO Cancer BSgenome BSgenome GO Cancer BSgenome BSgenome
updated 14.0 years ago by 16k • written 14.0 years ago by ★ 13k
0
votes
2
replies
717
views
Recycling vars with IRanges::reflect
Cancer IRanges Cancer IRanges
updated 14.1 years ago by ★ 1.6k • written 14.1 years ago by ★ 13k
0
votes
0
replies
822
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer made4 ASSIGN Cancer made4 ASSIGN
14.3 years ago Steve Lianoglou ★ 13k
0
votes
5
replies
1.3k
views
IRanges : Strange behavior subsetting an IntervalTree with an indexing variable from within a function
Cancer IRanges Cancer IRanges
14.6 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
878
views
"unexpected" result from IRanges::intersect
Cancer IRanges Cancer IRanges
updated 14.7 years ago by ★ 1.6k • written 14.7 years ago by ★ 13k
0
votes
1
reply
547
views
BioC 2.5 and BSgenome.Hsapiens.UCSC.hg19
Cancer Cancer
updated 14.7 years ago by 16k • written 14.7 years ago by ★ 13k
57 results • Page 1 of 2
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