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edgeR - expressen between genes
edgeR edgeR
13.3 years ago Jenny Drnevich ★ 2.0k
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632
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Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
GO GO
13.4 years ago Jenny Drnevich ★ 2.0k
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0
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958
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Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
13.4 years ago Jenny Drnevich ★ 2.0k
0
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6
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1.4k
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can't get limma for R 2.12.0 x64?
GO limma GO limma
updated 13.6 years ago by ▴ 100 • written 13.6 years ago by ★ 2.0k
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6
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1.5k
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question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago Jenny Drnevich ★ 2.0k
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0
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481
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question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.8 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
813
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Error in readBeadSummaryData
beadarray beadarray
updated 13.9 years ago by ▴ 620 • written 13.9 years ago by ★ 2.0k
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1
reply
647
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removing probes from affybatch error
cdf probe affy cdf probe affy
updated 14.2 years ago by 66k • written 14.2 years ago by ★ 2.0k
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1
reply
641
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can't use weights in single channel analysis?
Normalization GO Normalization GO
updated 14.2 years ago by 50k • written 14.2 years ago by ★ 2.0k
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0
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761
views
Rcode for removing probes
Normalization cdf probe affy Normalization cdf probe affy
14.3 years ago Jenny Drnevich ★ 2.0k
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1
reply
853
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FW: Problem in masking individual probes to calculate expression values
cdf probe gcrma cdf probe gcrma
updated 14.3 years ago by ▴ 50 • written 14.3 years ago by ★ 2.0k
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4
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1.1k
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Discrepancy on results from gcrma function and justGCRMA
gcrma GLAD gcrma GLAD
updated 14.3 years ago by 66k • written 14.3 years ago by ★ 2.0k
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1
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727
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GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ★ 2.0k
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3
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1.3k
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WARNING: difference in sorting order depending on computer platform?!?
GO probe GO probe
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ★ 2.0k
0
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1
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1.1k
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extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 14.4 years ago by ▴ 610 • written 14.4 years ago by ★ 2.0k
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0
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635
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removing probes from affybatch error
cdf probe cdf probe
14.4 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
602
views
R versions 2.10 : simple error, joke or truly intended ?
14.4 years ago Jenny Drnevich ★ 2.0k
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0
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642
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comparing Limma output from 2 different pre-processing methods
Cancer limma Cancer limma
14.5 years ago Jenny Drnevich ★ 2.0k
0
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4
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1.5k
views
problem connecting to bioMart - NOT proxy error
biomaRt biomaRt
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ★ 2.0k
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0
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601
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small bug in overview function of made4
GO Clustering GO Clustering
14.6 years ago Jenny Drnevich ★ 2.0k
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0
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568
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about Rgraphviz
Rgraphviz PROcess Rgraphviz PROcess
14.6 years ago Jenny Drnevich ★ 2.0k
0
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2
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1.0k
views
Fwd: edgeR with only 1 replicate?
Sequencing SAGE edgeR Sequencing SAGE edgeR
updated 14.9 years ago by ★ 6.0k • written 14.9 years ago by ★ 2.0k
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0
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666
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limma: analyzing randomized duplicate spots on Nimblegen array
Normalization limma Normalization limma
15.1 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
938
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changing gpr files?
Microarray Microarray
updated 15.1 years ago by ▴ 210 • written 15.1 years ago by ★ 2.0k
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0
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1.1k
views
affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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487
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Re : missing value in plotDensity
GO GO
15.3 years ago Jenny Drnevich ★ 2.0k
0
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3
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998
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Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)
Microarray GO limma Microarray GO limma
15.4 years ago Jenny Drnevich ★ 2.0k
0
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0
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683
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limma design question
GO limma GO limma
15.5 years ago Jenny Drnevich ★ 2.0k
0
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1
reply
942
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problem in beadsummary vignette from beadarray
beadarray beadarray
updated 15.5 years ago by ▴ 50 • written 15.5 years ago by ★ 2.0k
0
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2
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783
views
How to save result from limma
limma limma
updated 15.6 years ago by 50k • written 15.6 years ago by ★ 2.0k
0
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1
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849
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About ArrayExpress MAGE-TAB tools
Microarray ArrayExpress Microarray ArrayExpress
updated 15.7 years ago by 21k • written 15.7 years ago by ★ 2.0k
0
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4
replies
1.3k
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difference between rmaPLM and default fitPLM?
GO GO
15.8 years ago Jenny Drnevich ★ 2.0k
0
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1
reply
733
views
BioC2008 Talks and Lab Materials?
Alignment GO Biostrings Alignment GO Biostrings
updated 15.8 years ago by ▴ 540 • written 15.8 years ago by ★ 2.0k
0
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14
replies
1.8k
views
Rgraphviz, R 2.7.0 and Windows XP - SOLVED!
Rgraphviz Rgraphviz
16.0 years ago Jenny Drnevich ★ 2.0k
0
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0
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764
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How to install Rgraphviz on Windows - REALLY!
Rgraphviz Rgraphviz
16.0 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
896
views
subsetting an ExpressionSetIllumina object?
updated 16.0 years ago by ▴ 460 • written 16.0 years ago by ★ 2.0k
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