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edgeR - expressen between genes
edgeR edgeR
13.2 years ago Jenny Drnevich ★ 2.0k
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622
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Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
GO GO
13.3 years ago Jenny Drnevich ★ 2.0k
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0
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954
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Help expanding limmaUsersGuide section 8.7 to 3x2 factorial
13.3 years ago Jenny Drnevich ★ 2.0k
0
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6
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1.4k
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can't get limma for R 2.12.0 x64?
GO limma GO limma
updated 13.5 years ago by ▴ 100 • written 13.5 years ago by ★ 2.0k
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6
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1.4k
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question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago Jenny Drnevich ★ 2.0k
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0
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472
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question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
802
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Error in readBeadSummaryData
beadarray beadarray
updated 13.8 years ago by ▴ 620 • written 13.8 years ago by ★ 2.0k
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1
reply
644
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removing probes from affybatch error
cdf probe affy cdf probe affy
updated 14.1 years ago by 65k • written 14.1 years ago by ★ 2.0k
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1
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629
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can't use weights in single channel analysis?
Normalization GO Normalization GO
updated 14.2 years ago by 50k • written 14.2 years ago by ★ 2.0k
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0
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749
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Rcode for removing probes
Normalization cdf probe affy Normalization cdf probe affy
14.2 years ago Jenny Drnevich ★ 2.0k
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1
reply
843
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FW: Problem in masking individual probes to calculate expression values
cdf probe gcrma cdf probe gcrma
updated 14.2 years ago by ▴ 50 • written 14.2 years ago by ★ 2.0k
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4
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1.1k
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Discrepancy on results from gcrma function and justGCRMA
gcrma GLAD gcrma GLAD
updated 14.3 years ago by 65k • written 14.3 years ago by ★ 2.0k
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1
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719
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GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ★ 2.0k
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3
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1.3k
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WARNING: difference in sorting order depending on computer platform?!?
GO probe GO probe
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ★ 2.0k
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1
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1.0k
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extracting all GO terms from GOHyperGResult object?
Annotation GO hgu95av2 GOstats Annotation GO hgu95av2 GOstats
updated 14.3 years ago by ▴ 610 • written 14.3 years ago by ★ 2.0k
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0
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629
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removing probes from affybatch error
cdf probe cdf probe
14.3 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
590
views
R versions 2.10 : simple error, joke or truly intended ?
14.3 years ago Jenny Drnevich ★ 2.0k
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0
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633
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comparing Limma output from 2 different pre-processing methods
Cancer limma Cancer limma
14.5 years ago Jenny Drnevich ★ 2.0k
0
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4
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1.5k
views
problem connecting to bioMart - NOT proxy error
biomaRt biomaRt
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ★ 2.0k
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0
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597
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small bug in overview function of made4
GO Clustering GO Clustering
14.5 years ago Jenny Drnevich ★ 2.0k
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0
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559
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about Rgraphviz
Rgraphviz PROcess Rgraphviz PROcess
14.5 years ago Jenny Drnevich ★ 2.0k
0
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2
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1.0k
views
Fwd: edgeR with only 1 replicate?
Sequencing SAGE edgeR Sequencing SAGE edgeR
updated 14.8 years ago by ★ 6.0k • written 14.8 years ago by ★ 2.0k
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0
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661
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limma: analyzing randomized duplicate spots on Nimblegen array
Normalization limma Normalization limma
15.0 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
927
views
changing gpr files?
Microarray Microarray
updated 15.1 years ago by ▴ 210 • written 15.1 years ago by ★ 2.0k
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0
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1.1k
views
affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
15.2 years ago Jenny Drnevich ★ 2.0k
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0
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480
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Re : missing value in plotDensity
GO GO
15.2 years ago Jenny Drnevich ★ 2.0k
0
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3
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985
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Filtering before differential expression analysis of microarrays - New paper out (James W. MacDonald)
Microarray GO limma Microarray GO limma
15.3 years ago Jenny Drnevich ★ 2.0k
0
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0
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652
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limma design question
GO limma GO limma
15.4 years ago Jenny Drnevich ★ 2.0k
0
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1
reply
932
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problem in beadsummary vignette from beadarray
beadarray beadarray
updated 15.5 years ago by ▴ 50 • written 15.5 years ago by ★ 2.0k
0
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2
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769
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How to save result from limma
limma limma
updated 15.5 years ago by 50k • written 15.5 years ago by ★ 2.0k
0
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1
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837
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About ArrayExpress MAGE-TAB tools
Microarray ArrayExpress Microarray ArrayExpress
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 2.0k
0
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4
replies
1.3k
views
difference between rmaPLM and default fitPLM?
GO GO
15.7 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
724
views
BioC2008 Talks and Lab Materials?
Alignment GO Biostrings Alignment GO Biostrings
updated 15.7 years ago by ▴ 540 • written 15.7 years ago by ★ 2.0k
0
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14
replies
1.7k
views
Rgraphviz, R 2.7.0 and Windows XP - SOLVED!
Rgraphviz Rgraphviz
15.9 years ago Jenny Drnevich ★ 2.0k
0
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0
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758
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How to install Rgraphviz on Windows - REALLY!
Rgraphviz Rgraphviz
15.9 years ago Jenny Drnevich ★ 2.0k
0
votes
2
replies
878
views
subsetting an ExpressionSetIllumina object?
updated 15.9 years ago by ▴ 460 • written 16.0 years ago by ★ 2.0k
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