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Problem with ChIPpeakAnno - assignChromosomeRegion
ChIPpeakAnno ChIPpeakAnno
11.1 years ago Julie Zhu ★ 4.3k
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2
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1.2k
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ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
11.2 years ago • updated 11.1 years ago Julie Zhu ★ 4.3k
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0
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701
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AssignChromosomeRegion in ChIPpeakAnno 2.7.3
11.2 years ago Julie Zhu ★ 4.3k
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2
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1.3k
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ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 11.2 years ago by ▴ 10 • written 11.2 years ago by ★ 4.3k
0
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10
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2.4k
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.2 years ago Julie Zhu ★ 4.3k
0
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0
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3.4k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus biomaRt ChIPpeakAnno Mus musculus biomaRt ChIPpeakAnno
11.2 years ago Julie Zhu ★ 4.3k
0
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0
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800
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ChIPpeakAnno question--peak aggregation over bins from TSS
ChIPpeakAnno ChIPpeakAnno
11.3 years ago Julie Zhu ★ 4.3k
0
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3
replies
2.2k
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ChIPpeakAnno/IRanges - getAllPeakSequence(data, upstream = 25, downstream = 25, genome=Mmusculus)
11.4 years ago • updated 11.3 years ago Julie Zhu ★ 4.3k
0
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3
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1.8k
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Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
11.4 years ago Julie Zhu ★ 4.3k
0
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0
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820
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ChIPpeakAnno
Annotation Category ChIPpeakAnno Annotation Category ChIPpeakAnno
11.5 years ago Julie Zhu ★ 4.3k
0
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0
replies
574
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GeneNetworkBuilder package
Network Network
11.6 years ago Julie Zhu ★ 4.3k
0
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0
replies
1.2k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
0
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0
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821
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findOverlappingPeaks in ChipPeakAnno
annotate annotate
11.7 years ago Julie Zhu ★ 4.3k
0
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2
replies
712
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Fetch scaffold sequences from BSgenome package
BSgenome BSgenome BSgenome BSgenome
updated 11.7 years ago by 16k • written 11.7 years ago by ★ 4.3k
0
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0
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1.1k
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question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
0
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0
replies
699
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ChIPpeakAnno - keep fold enrichment information
11.7 years ago Julie Zhu ★ 4.3k
0
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3
replies
1.2k
views
RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
0
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4
replies
1.2k
views
ChIPpeakAnno
convert ChIPpeakAnno convert ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
0
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0
replies
1.3k
views
ChIPpeakAnno - getAnnotation
Alignment Annotation Alignment Annotation
11.7 years ago Julie Zhu ★ 4.3k
0
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0
replies
952
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ChIPpeakAnno - c elegans annotation feature type: translation start site
Transcription Transcription
11.7 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
11.8 years ago Julie Zhu ★ 4.3k
0
votes
0
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976
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
11.8 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
573
views
ChippeakAnno
updated 11.8 years ago by ▴ 10 • written 11.8 years ago by ★ 4.3k
0
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4
replies
1.3k
views
more question about makeVennDiagram
GO ChIPpeakAnno GO ChIPpeakAnno
11.8 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
999
views
Question about ChIPpeakAnno
annotate annotate
12.0 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
785
views
ChIPPeakAnno query (overlaps)
ChIPpeakAnno ChIPpeakAnno
12.0 years ago Julie Zhu ★ 4.3k
0
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0
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821
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ChIPpeakAnno annotatePeakInBatch
Cancer Cancer
12.0 years ago Julie Zhu ★ 4.3k
0
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0
replies
810
views
BiomaRt returns empty set for getBM for celegans miRNA
biomaRt biomaRt
12.0 years ago Julie Zhu ★ 4.3k
0
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0
replies
694
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question regarding ChIPPeakAnno use
12.0 years ago Julie Zhu ★ 4.3k
0
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2
replies
493
views
BSgenome.Celegans.UCSC.cd10 for WS220
BSgenome BSgenome BSgenome BSgenome
updated 12.1 years ago by 16k • written 12.1 years ago by ★ 4.3k
0
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0
replies
542
views
ChIPpeakAnno: Question about strand conversion in BED2RangedData()
convert convert
12.1 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.0k
views
ChIPpeakAnno: Inquiry for Worm Analysis
Annotation GO annotate convert ChIPpeakAnno Annotation GO annotate convert ChIPpeakAnno
12.2 years ago • updated 12.1 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
825
views
ChIPpeakAnno - Request of information
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
updated 12.1 years ago by ★ 1.3k • written 12.1 years ago by ★ 4.3k
0
votes
2
replies
1.0k
views
ChIPpeakAnno findVennCounts
ChIPpeakAnno ChIPpeakAnno
updated 12.2 years ago by ▴ 10 • written 12.2 years ago by ★ 4.3k
0
votes
4
replies
1.3k
views
question regarding ChIPPeakAnno use
ChIPpeakAnno ChIPpeakAnno
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ★ 4.3k
0
votes
1
reply
995
views
ChIPpeakAnno on pathway enrichment
Pathways GO ChIPpeakAnno Pathways GO ChIPpeakAnno
updated 12.2 years ago by ▴ 240 • written 12.2 years ago by ★ 4.3k
0
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0
replies
730
views
ChIPpeakAnno: makeVennDiagram and sampling peaks
GO GO
12.2 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
672
views
question about makeVennDiagram
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ★ 4.3k
0
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0
replies
508
views
ChipPeakAnno question about file conversion
convert ChIPpeakAnno convert ChIPpeakAnno
12.2 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
818
views
Help on alternative and efficient data frame manipulation
convert convert
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 4.3k
0
votes
3
replies
1.1k
views
[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
AnnotationData AnnotationData
updated 12.5 years ago by ▴ 50 • written 12.5 years ago by ★ 4.3k
0
votes
1
reply
870
views
ChIPpeakAnno, makeVennDiagram
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
12.5 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
1.1k
views
PICS
GO PICS GO PICS
updated 12.6 years ago by ▴ 20 • written 12.6 years ago by ★ 4.3k
0
votes
0
replies
757
views
ChIPpeakAnno - for genes with multiple isoforms
Transcription Annotation annotate ChIPpeakAnno Transcription Annotation annotate
12.6 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.1k
views
GetEnrichedGo term
Yeast biomaRt Yeast biomaRt
12.6 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
830
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch problems in R2.13/ChIPpeakAnno_1.8.0 and R2.13/ChIPpeakAnno_2.0.2
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.5k
views
ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.3k
views
chippeakanno:::addGeneID for adding gene symbol etc. to annotatedPeak or enrichedGO
Annotation convert biomaRt bridge ChIPpeakAnno Annotation convert biomaRt bridge
updated 12.8 years ago by ▴ 810 • written 12.8 years ago by ★ 4.3k
0
votes
0
replies
695
views
chippeakanno related
Annotation annotate convert biomaRt bridge Annotation annotate convert biomaRt bridge
12.8 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
810
views
chippeakanno related
Annotation convert biomaRt bridge Annotation convert biomaRt bridge
12.8 years ago Julie Zhu ★ 4.3k
167 results • Page 2 of 4
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