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reference manual
13.0 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.4k
views
Answer:
A: Limma, eBayes different sample size of groups and adjustment
13.0 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.0k
views
Comment:
C: what to do with microarray outliers?
13.0 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.6k
views
Comment:
C: limma
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
4
replies
1.4k
views
Using DESeq or EdgeR for Exon Differential Expression Analysis
Normalization
edgeR
DESeq
Normalization
edgeR
DESeq
updated 13.1 years ago by
adeonari@mrc-lmb.cam.ac.uk
▴ 30 • written 13.1 years ago by
Naomi Altman
★ 6.0k
0
votes
1
reply
1.1k
views
goseq: gene universe
GOstats
goseq
GOstats
goseq
updated 13.1 years ago by
Jenny Drnevich
★ 2.0k • written 13.1 years ago by
Naomi Altman
★ 6.0k
1
vote
1
reply
2.6k
views
goseq problem
edgeR
goseq
edgeR
goseq
13.1 years ago
Naomi Altman
★ 6.0k
1
vote
0
replies
2.6k
views
Answer:
A: goseq problem
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
750
views
Answer:
A: Separate channel analysis on connected design
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
1.8k
views
edgeR: calcNormFactors
updated 13.1 years ago by
João Moura
▴ 160 • written 13.1 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
3.0k
views
Answer:
A: How to model.matrix and makeContrasts for several groups with multiple treatment
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.8k
views
Comment:
C: edgeR: calcNormFactors
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
3
replies
1.1k
views
Please advice
Microarray
GO
limma
Microarray
GO
limma
updated 13.1 years ago by
mali salmon
▴ 370 • written 13.1 years ago by
Naomi Altman
★ 6.0k
0
votes
1
reply
1.1k
views
Answer:
A: Please advice
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
2.3k
views
Answer:
A: Problem with texi2dvi
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.2k
views
Answer:
A: Question for NGS seq data (time couse)
13.1 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.5k
views
Answer:
A: RNASeq, differential expression between group, and large variance within groups
13.2 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
677
views
nested effects?
13.2 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
839
views
Answer:
A: intraspotCorrelation vs duplicateCorrelation
13.2 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
632
views
intraspotCorrelation vs duplicateCorrelation
13.2 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.0k
views
Comment:
C: converting probe to gene level
13.3 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
2.5k
views
Answer:
A: Regression using LIMMA
13.5 years ago
Naomi Altman
★ 6.0k
3
votes
0
replies
2.2k
views
Answer:
A: limma for spectral counts
13.5 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
890
views
Several faculty positions in Statistics and Bioinformatics at Penn State
GO
GO
13.6 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.3k
views
Answer:
A: Bootstrapping paired samples and tiny groups
13.6 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
639
views
Using linear models to find differential gene expression (NGS)
13.7 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.3k
views
Answer:
A: post-hoc test after F-test in Limma
13.7 years ago
Naomi Altman
★ 6.0k
2
votes
1
reply
772
views
Five variables, ABCDE, how to check whether (A-B)/(A-C) is equal to D/E?
updated 13.7 years ago by
xie weibo
▴ 60 • written 13.7 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
1000
views
Answer:
A: Fisher-test
13.7 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.4k
views
Answer:
A: DESeq question correlation
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
2
replies
3.4k
views
Comment:
C: removal of genes with low expression values
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.1k
views
P>1 (edgeR and sage.test)
SAGE
qvalue
SAGE
qvalue
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
3.0k
views
Answer:
A: edgeR normalization factors
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
3.0k
views
Answer:
A: edgeR normalization factors
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
3.0k
views
Answer:
A: edgeR normalization factors
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.6k
views
Which package for gene expression correlation analysis
Cancer
affy
Cancer
affy
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.4k
views
Comment:
C: edgeR question
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.4k
views
Comment:
C: edgeR question
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.4k
views
Answer:
A: edgeR question
13.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.4k
views
Comment:
C: edgeR: a question about library size
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
3.3k
views
Comment:
C: DESeq and number of replicates required for RNA-Seq
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
3.3k
views
Answer:
A: DESeq and number of replicates required for RNA-Seq
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
3.3k
views
Answer:
A: DESeq and number of replicates required for RNA-Seq
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
3.3k
views
Answer:
A: DESeq and number of replicates required for RNA-Seq
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
1.0k
views
Comment:
C: Bayseq vignette is missing
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
2
replies
1.0k
views
Bayseq vignette is missing
baySeq
baySeq
updated 13.9 years ago by
Chao-Jen Wong
▴ 580 • written 13.9 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
1.5k
views
Answer:
A: Limma -time course - no replicates
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.5k
views
Answer:
A: Limma -time course - no replicates
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.5k
views
Answer:
A: Limma -time course - no replicates
13.9 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.0k
views
hexplom error
updated 13.9 years ago by
Deepayan Sarkar
▴ 220 • written 13.9 years ago by
Naomi Altman
★ 6.0k
601 results • Page
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