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LRT, pairwise comparisons and p-value adjustment
DESeq2
updated 8 weeks ago by 66k • written 8 weeks ago by ▴ 740
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421
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Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago boczniak767 ▴ 740
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1
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421
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Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago boczniak767 ▴ 740
0
votes
1
reply
421
views
Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago boczniak767 ▴ 740
1
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8
replies
421
views
Slightly different count plots from R and spreadsheet
DESeq2 ggplot2
9 weeks ago boczniak767 ▴ 740
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0
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421
views
Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago boczniak767 ▴ 740
0
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1
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353
views
Comment: Comment: LRT, more than two conditions and pairwise comparisons
9 weeks ago boczniak767 ▴ 740
1
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3
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352
views
LRT, more than two conditions and pairwise comparisons
DESeq2
updated 9 weeks ago by 66k • written 9 weeks ago by ▴ 740
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0
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998
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Comment: Comment: WGCNA soft thresholding suggesting a power of 1
4 months ago boczniak767 ▴ 740
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1
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498
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Comment: Comment: vst transformation and zero counts
5 months ago boczniak767 ▴ 740
0
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1
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498
views
Comment: Comment: vst transformation and zero counts
5 months ago boczniak767 ▴ 740
1
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5
replies
498
views
vst transformation and zero counts
DESeq2
updated 5 months ago by ★ 4.2k • written 5 months ago by ▴ 740
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0
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824
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Comment: Comment: Average biological replicates in RNA-seq
5 months ago boczniak767 ▴ 740
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1
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824
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Comment: Comment: Average biological replicates in RNA-seq
5 months ago boczniak767 ▴ 740
0
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1
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824
views
Comment: Comment: Average biological replicates in RNA-seq
5 months ago boczniak767 ▴ 740
3
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6
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824
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Average biological replicates in RNA-seq
Mfuzz RNASeq
5 months ago boczniak767 ▴ 740
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0
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592
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Comment: Comment: goseq, warning and strange plot from nullp
5 months ago boczniak767 ▴ 740
0
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1
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592
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Comment: Comment: goseq, warning and strange plot from nullp
5 months ago boczniak767 ▴ 740
1
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4
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592
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goseq, warning and strange plot from nullp
goseq
5 months ago boczniak767 ▴ 740
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0
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2.3k
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Comment: Comment: Time-course, comparison of two groups
15 months ago boczniak767 ▴ 740
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1
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2.3k
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Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
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0
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2.3k
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Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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0
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2.3k
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Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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1
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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0
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530
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata edgeR
updated 16 months ago by 51k • written 16 months ago by ▴ 740
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1
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2.3k
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Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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1
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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2
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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1
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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1
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
0
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1
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2.3k
views
Comment: Comment: Time-course, comparison of two groups
16 months ago boczniak767 ▴ 740
3
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20
replies
2.3k
views
Time-course, comparison of two groups
edgeR
16 months ago • updated 15 months ago boczniak767 ▴ 740
0
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1
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381
views
Time-course for three-factor design
DESeq2
updated 16 months ago by 42k • written 16 months ago by ▴ 740
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0
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943
views
Loading eSet.r objects from ArrayExpress
10.7 years ago boczniak767 ▴ 740
0
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0
replies
740
views
does contamination bother the normalization in transcriptome analysis
Normalization Normalization
11.2 years ago boczniak767 ▴ 740
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1
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2.0k
views
Comment: C: XML package - 500 internal server error
11.2 years ago boczniak767 ▴ 740
0
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0
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2.0k
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Comment: C: XML package - 500 internal server error
11.2 years ago boczniak767 ▴ 740
0
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5
replies
2.0k
views
XML package - 500 internal server error
GEOquery ArrayExpress GEOquery ArrayExpress
updated 11.2 years ago by 21k • written 11.2 years ago by ▴ 740
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0
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1.4k
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Answer: A: Limma/Affy - Include expression Intensity in Final 'decideTests' results
11.2 years ago boczniak767 ▴ 740
0
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2
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1.6k
views
Answer: A: Fwd: problem with reading gpr files
11.4 years ago boczniak767 ▴ 740
1
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1
reply
1.3k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.5 years ago boczniak767 ▴ 740
0
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1
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1.5k
views
Answer: A: Query regarding limma
11.5 years ago boczniak767 ▴ 740
0
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0
replies
725
views
Windows or Excel to R txt file
11.5 years ago boczniak767 ▴ 740
0
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1
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677
views
Answer: A: How to choose the most 2 different samples in an array experiment
12.4 years ago boczniak767 ▴ 740
0
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0
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1.9k
views
Comment: C: Odd warning in simpleaffy, using quality control
12.4 years ago boczniak767 ▴ 740
0
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2
replies
1.9k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.4 years ago by ▴ 280 • written 12.4 years ago by ▴ 740
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0
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1.1k
views
Answer: A: meta-analysis with RankProd
12.4 years ago boczniak767 ▴ 740
0
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0
replies
782
views
down-weighting control probes in limma (with Agilent arrays)?
Normalization limma Normalization limma
12.5 years ago boczniak767 ▴ 740
0
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1
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2.8k
views
Answer: A: Access to archived versions of Ensembl with biomaRt
12.6 years ago boczniak767 ▴ 740
0
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0
replies
1.6k
views
Answer: A: Limma question
12.6 years ago boczniak767 ▴ 740
104 results • Page 1 of 3
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