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Showing :
Mfuzz
•
reset
3
votes
6
replies
1.1k
views
Average biological replicates in RNA-seq
Mfuzz
RNASeq
9 months ago
boczniak767
▴ 740
0
votes
0
replies
525
views
Mfuzz package loading issues
Mfuzz
MacBook
loadingissues
13 months ago
Jon
• 0
0
votes
4
replies
1.0k
views
Mfuzz package loading issues
Mfuzz
loadingissues
macbook
13 months ago
Jon
• 0
0
votes
2
replies
1.0k
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
2.6 years ago
soda
▴ 80
1
vote
1
reply
697
views
Fuzzy C means clustering
Mfuzz
updated 4.1 years ago by
James W. MacDonald
67k • written 4.1 years ago by
syed.imtiazaziz
• 0
0
votes
0
replies
789
views
Mfuzz time-series design
mfuzz
normalization
5.4 years ago
xizhang
• 0
3
votes
9
replies
2.9k
views
DESeq2 Normalized Counts for Mfuzz
deseq2
rnaseq
mfuzz
updated 6.4 years ago by
Michael Love
43k • written 6.4 years ago by
rbenel
▴ 40
0
votes
0
replies
1.1k
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.4 years ago
prakashpandey1111
• 0
0
votes
0
replies
767
views
For optimal c and m using fuzzy c-means clustering
mfuzz
6.5 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.5k
views
expression profiles between DESeq2 and Mfuzz
deseq2
mfuzz
differential expression
timecourse
updated 8.2 years ago by
Michael Love
43k • written 8.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.3k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.7 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.7 years ago by
thomas.dobrenel
• 0
1
vote
1
reply
5.7k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz
clustering
bioinformatics
proteomics
timecourse
updated 8.8 years ago by
Laurent Gatto
1.6k • written 8.8 years ago by
under-waterworld
• 0
0
votes
0
replies
1.2k
views
Small bug in mfuzz.plot
Mfuzz
8.9 years ago
musically.ut
• 0
0
votes
0
replies
1.6k
views
mfuzz problems
Clustering
Mfuzz
Clustering
Mfuzz
10.6 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.2k
views
[Mfuzz] y-axis values
Clustering
Mfuzz
Clustering
Mfuzz
13.7 years ago
boczniak767
▴ 740
0
votes
3
replies
4.2k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 7 months ago by
Caio
• 0 • written 13.7 years ago by
boczniak767
▴ 740
0
votes
1
reply
1.7k
views
Mfuzz plot -pdf
Mfuzz
Mfuzz
updated 15.6 years ago by
James W. MacDonald
67k • written 15.6 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.5k
views
Mfuzz package
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.7 years ago by
James W. MacDonald
67k • written 15.7 years ago by
dorothyc
▴ 140
0
votes
4
replies
6.4k
views
Heatmap without using clustering result
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.8 years ago by
Steve Pederson
▴ 60 • written 15.8 years ago by
gregory voisin
▴ 430
19 results • Page
1 of 1
Recent ...
Replies
Answer: RSubread output significantly different from bash Subread output
by
Gordon Smyth
52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…
Answer: RSubread output significantly different from bash Subread output
by
ATpoint
★ 4.6k
The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
Comment: How to annotate a limma Elist raw class object with an annotation file
QSEA- Extraction of Normalized methylation across the samples
Awards
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Teacher
to
Michael Love
43k
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
ATpoint
★ 4.6k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bhandary.8590
▴ 20
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