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timecoursedata
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3
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13
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1.2k
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Timely differentially expressed genes
timecoursedata
limma
6 months ago • updated 3 months ago
triZZla
• 0
1
vote
6
replies
765
views
Time-series RNA-seq analysis using DESeq2
time-series
DESeq2
RNASeq
timecoursedata
TimeCourse
updated 7 months ago by
ATpoint
★ 3.9k • written 7 months ago by
Debebe
• 0
0
votes
1
reply
425
views
DESeq2, Timecourse using fitted splines
timecoursedata
RNASeqData
TimeCourse
DESeq2
updated 8 months ago by
Michael Love
41k • written 8 months ago by
georgii.vdovin
• 0
0
votes
0
replies
445
views
Plot profiles for each group - spline analysis in edgeR
timecoursedata
edgeR
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
boczniak767
▴ 720
0
votes
2
replies
593
views
DESeq2 replicates in time course data
DESeq2
timecoursedata
replicates
updated 12 months ago by
Michael Love
41k • written 12 months ago by
fepesanz8
• 0
0
votes
1
reply
582
views
Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2
time-series
timecoursedata
timecourse
multifactorial
updated 15 months ago by
Michael Love
41k • written 16 months ago by
arshad1292
• 0
0
votes
0
replies
911
views
Job:
Biostatistics Research Associate, York, UK
QTL
fourier
TimeSeriesExperiment
timecoursedata
2.9 years ago
Daphne
• 0
0
votes
3
replies
1.4k
views
Find DEPs among TMT labeling proteom time course data by limma
limma
proteomics
TMTlabeling
timecoursedata
updated 3.4 years ago by
SamGG
▴ 330 • written 3.4 years ago by
maleknias
• 0
8 results • Page
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
If you include `0+` in the model formula, then the order of the batch and treatment factors in the model becomes important. You need `0+gro…
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
James W. MacDonald
65k
The main goal here is to map human gene symbols to something else, which you can use the `Orthology.eg.db` package to do. You could also us…
Comment: How can I compute AIC for MAST hurdle model fitted in the whole dataset?
by
rproendo
▴ 20
Hi OP, checking in to see if you found a solution to this issue. I'm also interested in using AICs to evaluate model fits in MAST.
Comment: padj-based gradient scale from barplot (clusterProfiler results) does not work p
by
Eva
▴ 10
Oh god, it is right, how I didn't realise before. I got confused with the scientific format of the numbers and I was in a loop for nothing.…
Comment: Downloading count matrix for full recount3 dataset
by
Leonardo Collado Torres
★ 1.0k
AFAIK it's not.
Votes
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
DESeq2 design with multiple factors
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Dario Strbenac
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